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Oryza punctata (Oryza_punctata_v1.2)
Location
About this transcript

This transcript has 18 exons, is annotated with 33 domains and features and maps to 17 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OPUNC07G06470.12380604aa
 
Protein coding
A0A0E0LIB6 Ensembl Canonical
-OPUNC07G06470.22320584aa
 
Protein coding
A0A0E0LIB7 -
-OPUNC07G06470.32284572aa
 
Protein coding
A0A0E0LIB8 -
-OPUNC07G06470.42254562aa
 
Protein coding
A0A0E0LIB9 -
-OPUNC07G06470.52173535aa
 
Protein coding
A0A0E0LIC0 -
-OPUNC07G06470.62107513aa
 
Protein coding
A0A0E0LIC1 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ttggttctttcttcatcccttggctcttcgctctgctcctcctctctcgt
1OPUNC07G06470.1.exon15,968,6435,968,917-2275
GTTGGTGTTGCTTTGCTTTCTTCTTCCTCTGACGTTTCCCCCTCCCTCCCTCCCTCGCCA
CGGATCCGAGGTCTCTCAAAGCCCTAGCTACACCTCCTCCCCGACCTCTCCGCCCCGGCG
GCAATGGAGGACGAGGAGATGGAGAAGAAGGTGCACCAGTACCTGCAGCGGAAGGGCTTC
CGCATGGCGGAGCTCGCGCTGCTCGAGGACCGCACCCGCCTCTCCACCACCGCCTCCTCC
TCCTCCCACTCCCTCTCCGACGCCGCGCTCTCCAG                         
 Intron 1-25,968,9185,969,461544
gtagccttcccttcccttctccctc..........tgtttgtcatcgcctgcaatgacag
2OPUNC07G06470.1.exon25,969,4625,969,5432082
GTCGGAAAACGATCCAGCGAGGTACTATGATGGCTATAGTAAACTAAGAACATGGGCATA
CAGTTCTCTTGATCACTACAAG                                      
 Intron 2-35,969,5445,970,058515
gtgtgttacatgcgcagattgtaat..........ttctgaattttgatttctattgtag
3OPUNC07G06470.1.exon35,970,0595,970,1370179
CATGAATTACTCCGCATTCTTTATCCACTATTTGTCCACTGTTTCATGGATTTAGTGGCA
GAGGGACATACACAGGAAG                                         
 Intron 3-45,970,1385,970,246109
gtaatgctaggaggtggatatgata..........ataccctaacttgtgagcactacag
4OPUNC07G06470.1.exon45,970,2475,970,3381092
CTTGCTCATTTTTCCACACATTTCGTGAAGACCATGAGCATTCGAGGGATCTCAAGAAGC
TGGAAAGCATCCTTTCTCCTTTACATTTGGAG                            
 Intron 4-55,970,3395,970,465127
gttagtgtgtcagcttttccacatt..........atccttctaaatattgtaatttcag
5OPUNC07G06470.1.exon55,970,4665,970,5250060
GAAATGGAAGTGGCTCGATCTTTAAGGCAGAATAAATTCGGAATTAAGCTATGTGAGGTT
 Intron 5-65,970,5265,970,692167
gtataccatttccaaatcccctttc..........gtttctgtctttttttttattgcag
6OPUNC07G06470.1.exon65,970,6935,970,7800188
TATTCATATGAATTGCTTCTCCAGTATCTCCACAAAACACAAGCTCTTGTGGTGCTTGGA
ATAATCAATGAACGCATAGATTTTGAAG                                
 Intron 6-75,970,7815,970,896116
gtaagtttccccaatctgttaagac..........caactttcctttacaatattgatag
7OPUNC07G06470.1.exon75,970,8975,971,00610110
TATCCCCTGGGCGGTCTCCATTAATCGCTGATGACTCGGATGCTGTTGTTCTGATTGGAA
CTAGCAAGGACTTGACAAAACAGATAAATCAGAAGGAGGTGCATTGGGGG          
 Intron 7-85,971,0075,971,681675
gtatgttctgtaccagtctggtggt..........cactcttttcttatttttgctacag
8OPUNC07G06470.1.exon85,971,6825,971,83302152
AAAAGATCCTTAGAAGGTGGAAAGCAGGGTGGTTCACATAAAAAGATCAAAAAGGACAAG
CTTGTAGGAACCACAGGGAAAAACATGAAATCTGAAACTAGCATGGTTTCTGTAGCACCA
CGAGTTAAACCAGAGCTAACGCTTCCAATGAC                            
 Intron 8-95,971,8345,972,807974
gtatgtcgtacaatacatctttaat..........atagacgtttactgatctttttcag
9OPUNC07G06470.1.exon95,972,8085,972,91822111
GTCTGTTGAAGTTGAGCAGTCAATTCTTGAGGACTTGCGAAACCGTGCACAGTTGAATAG
CTTGGCATTGCCTTCTGTTAGCTTCTATACATTCCTTAATACACATAATGG         
 Intron 9-105,972,9195,972,97759
gtaaactcaactatggatcaatgtc..........tttttttcaatttttcctccatcag
10OPUNC07G06470.1.exon105,972,9785,973,0022025
TTTAATCATTATATGTGGAACTCAG                                   
 Intron 10-115,973,0035,973,136134
gttaaattgctcatcgatttcgcat..........ctgtattaattcgtaatagtaaaag
11OPUNC07G06470.1.exon115,973,1375,973,2020066
TGTAAAATCTCCTTGGTGTTCACTAGGTTTGGGATATGTCAAAGATTGGACAGCCTTCCA
AAGCAT                                                      
 Intron 11-125,973,2035,973,549347
gttagttgttcttcactccttattt..........tgattgaagaaactataattttcag
12OPUNC07G06470.1.exon125,973,5505,973,66101112
CCACACAAGGCGAGAATGGACCCTCCCAGGGTGAGCGTGTATCGACATCAGATGAAGCAC
GGAAATCCTGTACATTATTCCAAGGTCATTCTGGACCAGTTTATTCTGCCAC        
 Intron 12-135,973,6625,973,811150
gtttagcccaatcggggatttcctc..........atccatattttttgacttgttacag
13OPUNC07G06470.1.exon135,973,8125,973,8881077
TCCGTTTATGGAACACCAAGTTGAATGCGAATCTTGTTTGCTACAAAGGACACAACTACC
CTGTTTGGGATGTCCAA                                           
 Intron 13-145,973,8895,974,161273
gtatgtgattattcttttagtatat..........acactcttctgttttcttttggcag
14OPUNC07G06470.1.exon145,974,1625,974,27800117
TTTAGTCCAGTTGGTCATTACTTTGCTAGTGCTTCGCATGACAGGACCGCTAGAATCTGG
TCCATGGATAAAATCCAGCCTTTGAGAATAATGGCTGGGCATTTATCTGATGTTGAT   
 Intron 14-155,974,2795,974,409131
gtaagtgtactcatggttttggtca..........ttttaaaattatttttgcctgacag
15OPUNC07G06470.1.exon155,974,4105,974,67502266
TGTGTGCAATGGCATGTCAACTGCAACTACATTGCCACCGGCTCTAGTGACAAAACTGTA
AGACTATGGGATGTTCAAACCGGTGAATGTATAAGGATGTTTATTGGCCATAGGAGTATG
GTTTTATCATTGGCAATGTCTCCTGATGGGCGATACATGGCCTCTGGAGATGAAGATGGA
ACAATCATGATGTGGGATATATCTTCTGGTCGTTGTGTTTCACCACTAGTGGGACACAAC
TCTTGTGTGTGGTCGCTTGCTTACAG                                  
 Intron 15-165,974,6765,975,6981,023
gtaatcatcatttgatgctggtcgg..........ttaatacattctgccattattttag
16OPUNC07G06470.1.exon165,975,6995,975,7942296
CTGTGAAGGGGCATTACTTGCATCTGGATCAGCCGACTGCACTGTGAAACTATGGGATGT
CGCCTCCAGCACAAAGACTCTTAAGATGGATGATAC                        
 Intron 16-175,975,7955,975,87278
gtgagttgatcgaagtgtttataaa..........cttgttgtaaaatgtccttttacag
17OPUNC07G06470.1.exon175,975,8735,975,9482076
CAAAGGTGGTTCAGCTAACCGACTGAGGATGCTGAAAGCCCTCCCTACAAAATCAACCCC
TGTTTACACTCTGCAG                                            
 Intron 17-185,975,9495,976,048100
gtgagaattttttttccctcctcct..........cataactgctttcatcttgttgcag
18OPUNC07G06470.1.exon185,976,0495,976,5440-496
TTTTCTCGGAGGAATCTTTTATTTGCGGCTGGTGCTCCCTCGCTTGGCTCCTAAGCTTCT
GTATGTTCTATAGAGTACAAATAGCATTCTTTCAGTTTTGGTTTTAGTAAGGAGTAAAGT
TGATGTCTACTGGGGTGGCAGGTGTCGTAGCATCTACATTTTCCATTAGTGATCCCAGTG
AACCTAGGAGTAAATTATAGCACTGGGGCACTGCAATTCGTTGCAATATGTGTAGTGATG
TAGCATTAGCCAGTTCAAAATATATGCAATTTCCAGTAATGATACATCTAACTTGACTCT
ACATGTGCCATACTGTTTCAGCCCATCATTCTTTCCTCAGATTTGATCCCACCTCCCATA
CAAAGGGTATGGGTGGGATCAAATCTGAACCGAGGTATAACCGTGTAACCTCATTTTCTG
GATGAACCATGCCCGCGCGATAACTTCTTCTCACAGAAAATGATTAAAGCAGAGTTACTT
ATGTTCGGATTTCTGG                                            
3' downstream sequence
caatctaaatttggttctaactctcttggtaccaaacagtaagctccact..........