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    Oryza punctata (Oryza_punctata_v1.2) ▼

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    Transcript: OPUNC05G09770.1

    Description

    RING/U-box superfamily protein [Source:Projected from Arabidopsis thaliana (AT5G01960) TAIR;Acc:AT5G01960]

    Location

    Chromosome 5: 14,470,660-14,475,789 reverse strand.

    About this transcript

    This transcript has 8 exons, is annotated with 35 domains and features and maps to 26 oligo probes.

    Gene

    This transcript is a product of gene OPUNC05G09770 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OPUNC05G09770.11389462aa
     
    Protein coding
    		A0A0E0L0X4 Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........cgccttgtaggatttccccgccgtcgtcgccgtcgccttcgccgtaggcg
    1OPUNC05G09770.1.exon114,475,78914,475,18901601 
    ATGGAGCCATCGGCGGGGGGCTCCTCCGATCGCCGGGGTGCCGGGGCCGGCGCGGGTGCC
GGAGGAGCCGCAGCGCCGTCGGGCCTCCGCCGCTACGGCTTCAGATTCTCCGCCTCCAGC
CTCCTGCAGGCCCCGCTCGCCGCGCTGCTCGAGTACTCTGGCGTCGTCCCCTCCGGCCCC
GGCGCCACGCAGGTGGGGGCGCCCTCGACGCTGTTGTCCTCGCCGTCGTCGTCGTCGGCG
GCGGCGGAGGCCGATGGGCTGCTCTCCGCGGCCGCGGCTGGGGACGGGGAGGTCTCGATC
CGGATCCAGGGCGGCCCCGGGGAGGCCGACGCGGCGGGCGTCGCGGGGGCGGCCTCGTCG
GGGGAGGACTCGATCGAGGCGACCGCCGCCGGGGACGTTGACCCGGCCTCGGCTGCCGGG
GGCAGGGGTGGCGGCGCAGACGCGGAGGCGAGTGGTGGGGGCGCGGACGGCACGTCGGGG
AACGGGGGTGGGGACCGCGCCTACCAGCGGTATGACGTACACCATGTCGCGAGGTGGATC
GAACAGATACTGCCATTCTCGCTGCTGCTGCTCGTCGTCTTCATACGGCAGCATCTCCAA
G
     Intron 1-214,475,18814,474,1031,086 
    gtctaatactcattctcttgcgctg..........cgctaatggaagggttgttgtgcag
    2OPUNC05G09770.1.exon214,474,10214,474,0261077 
    GTTTCTTTGTCACAATTTGGATTGCTGCTGTAATGTTCAAGTCAAATGATATATTGCGGA
AGCAAACTGCTTTGAAG
     Intron 2-314,474,02514,473,601425 
    gtcttatttcttgatgcattacttt..........ttcatatttccaactctttttgcag
    3OPUNC05G09770.1.exon314,473,60014,473,43201169 
    GGCGAGAGAAAAATTGCTGTGCTTGTCGGGATTACAGTAATCTTCATGATTCATGTGTTT
GGTGTCTATTGGTGGTACAGGAATGATGATCTTCTCAGACCTCTGTTCATGCTTCCGCCA
AAAGAAATACCGCCATTTTGGCATGCGATTTTTATCATCATGGTCAATG
     Intron 3-414,473,43114,472,817615 
    gtactgatatttctttaaaggatta..........atttctaaccaaatgccacttgcag
    4OPUNC05G09770.1.exon414,472,81614,472,7281089 
    ATACAATGGTTCGCCAGGCAGCAATGGCCATTAAGTGCATGCTACTTATGTACTACAAGA
ATAGCAGAGGTCGTAACTACCGTAAGCAG
     Intron 4-514,472,72714,471,867861 
    gtgaccatttcttctaattgtcata..........gttcaaactctttctgttttgttag
    5OPUNC05G09770.1.exon514,471,86614,471,70200165 
    GGCCAAATGCTAACTCTTGTGGAATACCTTCTGCTCCTATATCGTGCCTTGTTACCAACT
CCTGTTTGGTACCGTTTCTTTCTGAACAAGGAATATGGGAGTCTTTTCTCATCTTTAACC
ACTGGACTGTACCTGACCTTCAAGTTAACTTCAGTAGTTGAAAAG
     Intron 5-614,471,70114,471,585117 
    gtactactttactagttactgcagc..........tctcattgttggctgtatgttccag
    6OPUNC05G09770.1.exon614,471,58414,471,5070078 
    GTTCAGTCATTCTTGGCTGCAGTGAAAGCATTGTCACGTAAAGATGTGCATTATGGGTCT
TATGCGACAGCAGAACAG
     Intron 6-714,471,50614,471,285222 
    gtaaaagttcatctactggcaagtt..........acttttttgctggtaccttgttcag
    7OPUNC05G09770.1.exon714,471,28414,471,18102104 
    GTAATTGCTGCTGGTGATATGTGTGCCATCTGCCAGGAGAAGATGCATGTTCCTGTCCTC
CTCCGCTGTAAACATATTTTCTGTGAGGACTGTGTCTCTGAATG
     Intron 7-814,471,18014,470,766415 
    gtaagttcttttcttattttatatt..........cagctttttcctgcttctgttttag
    8OPUNC05G09770.1.exon814,470,76514,470,66020106 
    GTTTGAGCGAGAACGGACTTGCCCCCTGTGTAGAGCATTGGTAAAGCCCGCTGATATTCG
GTCATTTGGTGATGGTTCTACAAGTCTTTTCTTCCAGTTGTTTTAG
    3' downstream sequence 
    acaccaaatgggaaactgctaacatataacaatggacaagcaattgctta..........

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