Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OPUNC04G28290.1

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Description

tubulin folding cofactor B [Source:Projected from Arabidopsis thaliana (AT3G10220) TAIR;Acc:AT3G10220]

Location

Chromosome 4: 33,518,118-33,521,054 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features and maps to 20 oligo probes.

Gene

This transcript is a product of gene OPUNC04G28290 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OPUNC04G28290.1	798	265aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0KX91	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	42	118	-	3.10.20.90	-
PANTHER	161	251	-	PTHR18916	-
Pfam	183	249	CAP Gly-rich domain	PF01302	IPR000938 [Display all genes with this domain]
SMART	183	250	CAP Gly-rich domain	SM01052	IPR000938 [Display all genes with this domain]
PROSITE profiles	203	245	CAP Gly-rich domain	PS50245	IPR000938 [Display all genes with this domain]
Superfamily	124	253	CAP Gly-rich domain superfamily	SSF74924	IPR036859 [Display all genes with this domain]
Gene3D	177	258	CAP Gly-rich domain superfamily	2.30.30.190	IPR036859 [Display all genes with this domain]
CDD	13	114	Tubulin-folding cofactor B, N-terminal ubiquitin-like domain	cd01789	IPR045172 [Display all genes with this domain]
Pfam	55	119	Ubiquitin-like domain	PF14560	IPR000626 [Display all genes with this domain]
Superfamily	54	122	Ubiquitin-like domain superfamily	SSF54236	IPR029071 [Display all genes with this domain]

Other features

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Feature type	Start	End
Seg	38	41
Alphafold	1	265

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