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    Oryza punctata (Oryza_punctata_v1.2) ▼

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    Transcript: OPUNC02G25510.1

    Location

    Chromosome 2: 30,430,485-30,436,993 forward strand.

    About this transcript

    This transcript has 10 exons, is annotated with 33 domains and features and maps to 26 oligo probes.

    Gene

    This transcript is a product of gene OPUNC02G25510 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OPUNC02G25510.22113457aa
     
    Protein coding
    		A0A0E0K3K8 Ensembl Canonical
    -OPUNC02G25510.31975411aa
     
    Protein coding
    		A0A0E0K3K9 -
    -OPUNC02G25510.11542418aa
     
    Protein coding
    		A0A0E0K3K7 -

    Domains & features

    Domains

    Show/hide columns
    • Domain source
    • Start
    • End
    • Description
    • Accession
    • InterPro
    Download what you seeDownload whole table
    Domain sourceStartEndDescriptionAccessionInterPro
    Gene3D102135-2.30.30.1190-
    PROSITE profiles143175-PS50294-
    PROSITE profiles266299-PS50294-
    Pfam109129E3 ligase, CCCH-type zinc fingerPF18044IPR041367 [Display all genes with this domain]
    Prints162176G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints283297G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    Prints349363G-protein beta WD-40 repeatPR00320IPR020472 [Display all genes with this domain]
    PANTHER109399WD repeat-containing protein 86-likePTHR44489IPR044715 [Display all genes with this domain]
    SMART136175WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam141175WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles143184WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART215252WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    SMART259296WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    Pfam262296WD40 repeatPF00400IPR001680 [Display all genes with this domain]
    PROSITE profiles266305WD40 repeatPS50082IPR001680 [Display all genes with this domain]
    SMART299362WD40 repeatSM00320IPR001680 [Display all genes with this domain]
    PROSITE patterns283297WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
    Superfamily136399WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
    Gene3D136192WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    Gene3D193413WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]
    PROSITE profiles2854Zinc finger, CCCH-typePS50103IPR000571 [Display all genes with this domain]
    SMART2953Zinc finger, CCCH-typeSM00356IPR000571 [Display all genes with this domain]
    PROSITE profiles105132Zinc finger, CCCH-typePS50103IPR000571 [Display all genes with this domain]
    SMART107131Zinc finger, CCCH-typeSM00356IPR000571 [Display all genes with this domain]
    Superfamily107130Zinc finger, CCCH-type superfamilySSF90229IPR036855 [Display all genes with this domain]

    Other features

    Show/hide columns
    • Feature type
    • Start
    • End
    Download what you seeDownload whole table
    Feature typeStartEnd
    MobiDBLite130
    MobiDBLite57105
    MobiDBLite77100
    MobiDBLite396418
    MobiDBLite403412
    Seg78103
    Seg400412
    Alphafold1418

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