Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OPUNC02G12840.1

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Description

Transducin/WD40 repeat-like superfamily protein [Source:Projected from Arabidopsis thaliana (AT5G54520) TAIR;Acc:AT5G54520]

Location

Chromosome 2: 13,337,506-13,342,352 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 26 domains and features and maps to 28 oligo probes.

Gene

This transcript is a product of gene OPUNC02G12840 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OPUNC02G12840.1	1371	456aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0JZ44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	155	189	-	PS50294	-
PROSITE profiles	241	278	-	PS50294	-
PANTHER	5	456	WD repeat-containing protein	PTHR44566	IPR053053 [Display all genes with this domain]
SMART	148	188	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	152	188	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	155	189	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	193	232	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	198	232	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	200	241	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	235	274	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	237	274	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	241	283	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	277	323	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
SMART	372	413	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	378	413	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
SMART	416	456	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Superfamily	147	455	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	137	456	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	11
MobiDBLite	1	83
MobiDBLite	24	41
MobiDBLite	51	64
Seg	6	67
Seg	91	112
Seg	213	223
Alphafold	1	456

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