Oryza nivara (Oryza_nivara_v1.0)
Location
About this transcript

This transcript has 3 exons, is annotated with 8 domains and features and maps to 40 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA05G30200.21514290aa
 
Protein coding
A0A0E0HJF1 Ensembl Canonical
-ONIVA05G30200.1845280aa
 
Protein coding
A0A0E0HJF0 -
Codons
  • Alternating codons
  • Alternating codons
Exons
  • An exon
  • Another exon
Variants
  • loading
Other
  • UTR
Markup
  • loading
                                                                          
     1 ATGGCGCGAGGCGGCGAGACGGCGCTAGGGCGAGTTGGCGCGATGGGCAGAGGGGCCAGA     60
     1 ATGGCGCGAGGCGGCGAGACGGCGCTAGGGCGAGTTGGCGCGATGGGCAGAGGGGCCAGA     60
     1 -M--A--R--G--G--E--T--A--L--G--R--V--G--A--M--G--R--G--A--R-     20

                                                                          
    61 TGGGGTGGCGATGAATGCGCGAGGGCGAGCATCGGGTCGGCGGCGGTGCCGATCTGTGCG    120
    61 TGGGGTGGCGATGAATGCGCGAGGGCGAGCATCGGGTCGGCGGCGGTGCCGATCTGTGCG    120
    21 -W--G--G--D--E--C--A--R--A--S--I--G--S--A--A--V--P--I--C--A-     40

                                                                          
   121 ACGGCGAGGGCGAGCGATCAAGAGAACGAGATGCCGGAGGACCCTTTTGAGATCGTGTCC    180
   121 ACGGCGAGGGCGAGCGATCAAGAGAACGAGATGCCGGAGGACCCTTTTGAGATCGTGTCC    180
    41 -T--A--R--A--S--D--Q--E--N--E--M--P--E--D--P--F--E--I--V--S-     60

                                                                          
   181 ATCTTCATGGATGATTTTAGTAGCACGAAGAGGAACATTATTGGCCATGTCTCTGGGTGG    240
   181 ATCTTCATGGATGATTTTAGTAGCACGAAGAGGAACATTATTGGCCATGTCTCTGGGTGG    240
    61 -I--F--M--D--D--F--S--S--T--K--R--N--I--I--G--H--V--S--G--W-     80

                                                                          
   241 TTGATGAGCGACAGCCGCGAAGATAAGATTGATGACTTTGTCCAAGAAATGGAGATGACC    300
   241 TTGATGAGCGACAGCCGCGAAGATAAGATTGATGACTTTGTCCAAGAAATGGAGATGACC    300
    81 -L--M--S--D--S--R--E--D--K--I--D--D--F--V--Q--E--M--E--M--T-    100

                                                                          
   301 CGCTTCTGGCCGCTGGAAAGGAGAGAAGTTATTGCTGAGGTCCTCCTCAAGAATGTAGAC    360
   301 CGCTTCTGGCCGCTGGAAAGGAGAGAAGTTATTGCTGAGGTCCTCCTCAAGAATGTAGAC    360
   101 -R--F--W--P--L--E--R--R--E--V--I--A--E--V--L--L--K--N--V--D-    120

                                                                          
   361 CTGAAAACCAAGTACCACTGCCCTGAGAAATATGAAAATGAAGAACGTCTCGCTGATCAT    420
   361 CTGAAAACCAAGTACCACTGCCCTGAGAAATATGAAAATGAAGAACGTCTCGCTGATCAT    420
   121 -L--K--T--K--Y--H--C--P--E--K--Y--E--N--E--E--R--L--A--D--H-    140

                                                                          
   421 AAGGCCCAGTGTAGCTTCAGACCTGTTACCTGCCCCAATGATGGATGCCGAGCGAAAGTT    480
   421 AAGGCCCAGTGTAGCTTCAGACCTGTTACCTGCCCCAATGATGGATGCCGAGCGAAAGTT    480
   141 -K--A--Q--C--S--F--R--P--V--T--C--P--N--D--G--C--R--A--K--V-    160

                                                                          
   481 TCTGTTCGCTGCATGCAAGACCATGATTCAGCTTGCCTGTTTAAAATCCTTACATGTGAG    540
   481 TCTGTTCGCTGCATGCAAGACCATGATTCAGCTTGCCTGTTTAAAATCCTTACATGTGAG    540
   161 -S--V--R--C--M--Q--D--H--D--S--A--C--L--F--K--I--L--T--C--E-    180

                                                                          
   541 CAGAACTGTGAGAAGCGGCTTCTGAGGCGTGATATGGATAGGCACTGCGTGACTGTGTGC    600
   541 CAGAACTGTGAGAAGCGGCTTCTGAGGCGTGATATGGATAGGCACTGCGTGACTGTGTGC    600
   181 -Q--N--C--E--K--R--L--L--R--R--D--M--D--R--H--C--V--T--V--C-    200

                                                                          
   601 CCCATGAGGCCCATGAAATGCCCTTTTGGCTGTGATTCCTCCTTTCCTGAGCGTAATCTT    660
   601 CCCATGAGGCCCATGAAATGCCCTTTTGGCTGTGATTCCTCCTTTCCTGAGCGTAATCTT    660
   201 -P--M--R--P--M--K--C--P--F--G--C--D--S--S--F--P--E--R--N--L-    220

                                                                          
   661 GAGCAGCACTGTTCTGAGTTTCTTCAGGCACACCTCCATAAACTCCTCAAGGCTATTCAT    720
   661 GAGCAGCACTGTTCTGAGTTTCTTCAGGCACACCTCCATAAACTCCTCAAGGCTATTCAT    720
   221 -E--Q--H--C--S--E--F--L--Q--A--H--L--H--K--L--L--K--A--I--H-    240

                                                                          
   721 AAGAAAGGTTTTACAGATGAGGGGCTCAAGGACCATGCTCTACTGCTGGAAAAGCATGAC    780
   721 AAGAAAGGTTTTACAGATGAGGGGCTCAAGGACCATGCTCTACTGCTGGAAAAGCATGAC    780
   241 -K--K--G--F--T--D--E--G--L--K--D--H--A--L--L--L--E--K--H--D-    260

                                                                          
   781 AATGATGGTAAACTGGCTAAATCTCGGGATGTAAGATCTCTTACTAATGTTGTAAAGAAT    840
   781 AATGATGGTAAACTGGCTAAATCTCGGGATGTAAGATCTCTTACTAATGTTGTAAAGAAT    840
   261 -N--D--G--K--L--A--K--S--R--D--V--R--S--L--T--N--V--V--K--N-    280

                                                                          
   841 CTTGAAGCCAAAATAAAAGATGATTCGAGTTAGAGTGGATGGCGTCTCCAGAGCAAAATG    900
   841 CTTGAAGCCAAAATAAAAGATGATTCGAGTTAG...........................    873
   281 -L--E--A--K--I--K--D--D--S--S--*-...........................    290

                                                                          
   901 CAAGTTTTTTTTGAGGCAGCAAAATGCAGCATGGATATTGAATGGTATAGTTGAAGAGTT    960
       ............................................................       
       ............................................................       

                                                                          
   961 GTTTTTCCACTCACAGTATACACAGAAGAGTACAAGAATGTTTTCCCTCATGATTTTTCT   1020
       ............................................................       
       ............................................................       

                                                                          
  1021 TTTCTCAAAATCGGTTAGTTTTTTATGGTGTAAAAGTATAACATTATTTTATCCTTGCTA   1080
       ............................................................       
       ............................................................       

                                                                          
  1081 TTTTGTCCAAGGAACTCTTTTTTTTTCATATAAATTGAGAATAATTTATCAGGAATGCTA   1140
       ............................................................       
       ............................................................       

                                                                          
  1141 ATTTTTGTTTAATTTATGGAAGGGCGATGCTCGAAGTAAGGGATGTTTTTCCCAGTCTGA   1200
       ............................................................       
       ............................................................       

                                                                          
  1201 TTCCGTTCCCTGTACCAGCTAAATACCCACTAGCTAAATGCTATTCCTCACAATGTTATT   1260
       ............................................................       
       ............................................................       

                                                                          
  1261 ATTTGTTTTTTGGAAACTTTTTTTTTCAATGATCCAGATCAAGGTTAGGAACACTAGCAT   1320
       ............................................................       
       ............................................................       

                                                                          
  1321 TTATCGGTAAACTGTTGGAATGGTTTAAATTCAAATTTTATTTTTTGATTTACACTTAGT   1380
       ............................................................       
       ............................................................       

                                                                          
  1381 ACCGTTTACATGCCCTCACATGTATAATGCCCATTGATAGGATATCTCCACCTCCTACAA   1440
       ............................................................       
       ............................................................       

                                                                          
  1441 GTTGTGTCGTTTTCATTTATCATGGATTCGTGTATGATGTTTATTTCAATGTATAAATTA   1500
       ............................................................       
       ............................................................       

                                                                          
  1501 TTACAAGAATGTCA                                                 1514
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