Oryza nivara (Oryza_nivara_v1.0)
Description

Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein [Source:Projected from Arabidopsis thaliana (AT5G04240) TAIR;Acc:AT5G04240]

Location
About this transcript

This transcript has 8 exons, is annotated with 34 domains and features and maps to 98 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA03G03740.256781477aa
 
Protein coding
A0A0E0GGW8 Ensembl Canonical
-ONIVA03G03740.356361463aa
 
Protein coding
A0A0E0GGW9 -
-ONIVA03G03740.155431432aa
 
Protein coding
A0A0E0GGW7 -

Protein domains for ONIVA03G03740.1.

HAMAP

HAMAP families.

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SFLD

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TIGRFAM

Protein domains and motifs from the TIGRFAM database.

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PIRSF

Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.

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Transmembrane helices

Transmembrane helices predicted by TMHMM.

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Coiled-coils (Ncoils)

Coiled-coil regions predicted by Ncoils.

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Cleavage site (Signalp)

Signal peptide cleavage sites predicted by SignalP.

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AFDB-ENSP mappings

Protein features that represent the mapping between Ensembl proteins (ENSP) and AlphaFoldDB protein structures (including their corresponding chains). Imported via UniProt mappings

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Prints

Protein fingerprints (groups of conserved motifs) from the PRINTS database.

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NCBIFAM

NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).

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CDD

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MobiDB lite

Intrinsically disordered regions predicted by MobiDB lite.

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Low complexity (Seg)

Low complexity peptide sequences identified by Seg.

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Superfamily

Protein domains and motifs from the SUPERFAMILY database.

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SMART

Protein domains and motifs from the SMART database.

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Pfam

Protein domains and motifs from the Pfam database.

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PROSITE profiles

Protein domains and motifs from the PROSITE profiles database.

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PROSITE patterns

Protein domains and motifs from the PROSITE patterns database.

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PANTHER

PANTHER families.

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Gene3D

CATH/Gene3D families.

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Statistics

Ave. residue weight: 109.488 g/mol

Charge: -9.5

Isoelectric point: 6.1270

Molecular weight: 156,786.92 g/mol

Number of residues: 1,432 aa