Oryza nivara (Oryza_nivara_v1.0)
Location
About this transcript

This transcript has 14 exons, is annotated with 14 domains and features and maps to 55 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA08G26150.21620411aa
 
Protein coding
A0A0E0IFL3 Ensembl Canonical
-ONIVA08G26150.11696343aa
 
Protein coding
A0A0E0IFL2 -
-ONIVA08G26150.31479364aa
 
Protein coding
A0A0E0IFL4 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tccgtgcccgtcgaccaccgtggtgctcgccggcgacggacggagcgaga
1ONIVA08G26150.1.exon126,135,33726,135,3600024
ATGCAGGGCGGATCTAGCGGCATC                                    
 Intron 1-226,135,36126,135,45898
gtctacggcggcctcaagtaccagg..........tcacccttgcaccccactcttgcag
2ONIVA08G26150.1.exon226,135,45926,135,5420084
GCGCGGTGCATCGCCGACGTGCGCGCGGCCGCCGGGTCGACCACCTTCCTCGCCGGAACC
CTCAGTCTCAAGGAGGAGAACGAG                                    
 Intron 2-326,135,54326,135,693151
gtgcgtctcctggaggaggggggga..........ctaactcgttgttgctgccaagtag
3ONIVA08G26150.1.exon326,135,69426,135,82601133
GTGCACCTGATCCGGTTTTCACCGGCGGAGAGCGAGCTGGTGTGCGACGGGCTGTTCTAC
CATCCAAACGAGATCTGGGACCTTAAGTCTTGCCCCTTCGATCATAGGGTCTTCTCCACA
GTCTACACGTCTG                                               
 Intron 3-426,135,82726,135,934108
gtaaagaaagaattcccctctttgt..........ctttatgttatgatatggatggaag
4ONIVA08G26150.1.exon426,135,93526,136,04612112
GCGAGGGCTATGGTGCATCTGTTTGGAAGATCCCGGAGCTGCACGGGCAGTCGAATTCGC
CGCCACTTGAGCAGCTTTTCACGCTTGATGAGCACACGGGCAAAATAAGATG        
 Intron 4-526,136,04726,136,624578
gtgcgcgctcttgtttctgttgatg..........tctgtaagctggcttatctttgcag
5ONIVA08G26150.1.exon526,136,62526,136,72420100
TGTTCTCTGGTGGCCACTAGGGAAGCACGACAAGTTAATTAGTATTGATGACAGAAATAT
TTTCCTCTGGAATATAGATGCATCAAATAAGTCAGCCAAG                    
 Intron 5-626,136,72526,136,904180
gtgtgcccagcatccttctgtttta..........cctaacttgaattcctaagttacag
6ONIVA08G26150.1.exon626,136,90526,137,03202128
GTGATGCAAAAGGGGTCTGCTGACATGCTTCCCAATTTACGTGGTGGATCTTGGGATCCA
CACGATCACAATTCAATTGCTGCAATTACTGATTCCTCACTTCACTGCTGGGATCTCCGT
TCTATGAA                                                    
 Intron 6-726,137,03326,137,140108
gttaataccttcacaatcttgacat..........ttatctgtgaacttgttcttttcag
7ONIVA08G26150.1.exon726,137,14126,137,2102070
GAAATCAAATGCAATTGAGCATGCGCATTTTCGGGATGTGGATTATAACCCCAAGAAACA
GCACTTAATT                                                  
 Intron 7-826,137,21126,137,642432
gtgagtggtgatacttgccgtactt..........ataaaagatcctttatgcattgtag
8ONIVA08G26150.1.exon826,137,64326,137,7310289
ACAACAGCAGAAGATGAATTTGGTATCCGTTTGTGGGATCTCAGAATGCTTAAGTATCCT
CTGAAGAATCTCCCTGGGCATTCGCATTG                               
 Intron 8-926,137,73226,137,81382
gtatatttctatatcctgttttact..........tagtcgacccttgtgaattttgcag
9ONIVA08G26150.1.exon926,137,81426,137,8592046
GACATGGGCTGTTCGGCACAATCCTGAGCATGACCAGTTGATTCTG              
 Intron 9-1026,137,86026,137,94889
gtctctccctctctctctatttctt..........actgactacattgtaactcctgtag
10ONIVA08G26150.1.exon1026,137,94926,138,0190271
AGTGCTGGAACAGATTCAACTGTCAATTTGTGGTTTGCTAAAGTTGGCACTGATGACTCA
GGACCTGAAAG                                                 
 Intron 10-1126,138,02026,138,09677
gtttctattccttgtgtattttctt..........tgatgcccacattcttgcttatcag
11ONIVA08G26150.1.exon1126,138,09726,138,1702174
TCCTCCTGGTTCACCCACAAGAGAAGAAGAACCATTACTAAATTCATACACTGATTATGA
AGATAGCATATACG                                              
 Intron 11-1226,138,17126,138,25484
gtaccctcaggaattcctacctgtg..........cacacagcgtattaaaaaattgtag
12ONIVA08G26150.1.exon1226,138,25526,138,3131059
GTATTGCATGGAGCTCCCATGATCCGTCATTATTTGCTTCTTTATCTTATGACGGAAGG 
 Intron 12-1326,138,31426,138,435122
gtaagtacctgcagcatttgtatgc..........tgtgataatttcctctaatggtcag
13ONIVA08G26150.1.exon1326,138,43626,138,4970-62
GTTGTTTTAGAATCAGTCAAGCCCTACTTGCAGAGAAAATGAAGCTGCATGTTCTCTCCG
TT                                                          
 Intron 13-1426,138,49826,138,600103
gtaagggcacataactccacttctt..........gaccttcccttttctgctcaagcag
14ONIVA08G26150.1.exon1426,138,60126,139,244--644
ACTTGTTTGTTGTGCATATTATTGGTGTTGTAGATTTTCTCCTTGCCATCCTATATACTG
TACTCTGGTACATGGAGTTGATGCGATGGCCTGATTCGACAGCTTGTGACCCCAGAACAA
TAGCAATAATGTTTCAGTAACCATCTTGGCAGAAATCCAGTGTCTCATATGATCTGCCAC
TCTTGTGATTCAGGCCAGCTGTAATTGCAAAATTCAGCCTGGTACAATTGCCAAATACTG
CTCCTCGAGTGATTCTTGAATGTCATATATCTGAGAAAGGTTGGTGTCAATTGTTGCGTT
ATGTGGTGAAGTACAACCGATCTGAATTTTGTAGAACTGTTGAGATTGACAAGATCTGAG
CTTCTGTTTTTCATTCGATTTTTCACTGTATGAGTGGTTCCCTTACTTTAGCAAAGATTA
ATATTTCGTCTGTATGTTACAAAATCATTCAGGGAATGAGCAAATTAACTTCAAATTGTT
TTGGGCATGAGCCACCTACGAACTTGTCATGCGTTCAGGACGGCAGGCTCACATGCTTTC
AGCATTTCTTTTTCGCGAAGATTTTGTCGACAGTTTCTTTTTAAATCATATGTGTTCGCT
GATACCCCCTCCGTTTCAAAATATTTGACTCCGTTGATTTTTTT                
3' downstream sequence
agcacatgtttgaccgttcgtcttatttaaaaaatttgtgaaatatataa..........