Oryza nivara (Oryza_nivara_v1.0)
Description

SET domain protein 2 [Source:Projected from Arabidopsis thaliana (AT4G15180) TAIR;Acc:AT4G15180]

Location
About this transcript

This transcript has 22 exons and is annotated with 44 domains and features.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA08G04720.283062246aa
 
Protein coding
A0A0E0I7V2 Ensembl Canonical
-ONIVA08G04720.181922208aa
 
Protein coding
A0A0E0I7V1 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........aactcctctcctccaaaagagatagactccgtcccccgtctccgtctctc
1ONIVA08G04720.1.exon13,813,3333,813,654--322
TCCCCATAAGAGGCGAGGGCGGAGGAAGGCTTTACGAGCAAACCAGGCCATTACACCCCC
AAAAACTAAGGGAGAGAGAGAGAAAGAGAGAAAGGCAAAACACACAGGAGGAGGGGACAC
ACGCCTCCGCCTCCACCTCCTCCCGAGGCGATAGCGAGCTCGCCTCCGCCTCCGCCTCCG
CCGCGCCGCCCCGCCGACGACGAGGAGGAAGAGGCGACGCCGCCGCCGCCGCCGCAGGAG
GAGGAGGAGGCGACGCCCGTGGGGAGCTCGCGCGACGCCGGATCTCGCGATCTGAGGGGC
CCCCGCGCCAATTCCCCCGCAG                                      
 Intron 1-23,813,6553,813,784130
gtgcgcgcgcgctccaccccccacg..........tgctctcctctgtgcttggaattag
2ONIVA08G04720.1.exon23,813,7853,815,794-12,010
GGTTTTGCGGCGGTGGAGACGGAGATGAGCGTGGAGAGCCCTGGAGGAGCCCCCGGGAGC
TAGGGTTTCGCGCGACGGGACCGGGACGACGGCCGCCCCGACAAGCTCCTAGGTCTTCCA
TGGGAGATGGAGGTGTCGCGTGCGCCGTCCCGCCGCAGCGTGCAGTGGAGGGCTTCCGCG
CCGGGGGCCTCGTGAGGAGACCAGGGGGAGAAGCCATGCCGGACAAGGGGGAGAGGGGAC
ACCACACCACCAGCAACAACCACCACAGCCACAGCCACAGCCACCGGAAGCATCAGGCCG
AGCTGGAGGAAGGGGAGCTGCTCAATGGGGAGGCTGACAACAGCAGCAGCCGGGACTTGG
AGAGGAGCATGCCTCCCAAGAAGTGGCGGAAGGTGCTGGCTGCCTCCTCTGCTGCAGAGG
TGGAGCCGGGGGAGATTGTGATGCCCTCCAAGAAGGCGAGGAAGAACGGGGAGCTCGAGA
AGGGGGAGATTGCCCCTGAGAGACAGAGGAAGGACAAGTCTGATAAGAGTGGGAGGAAGT
CGAATAAGGATGAGGTGGAACCAGGGGAAGTTGCTCCACCAGATAAGAAGCAGGACCGGG
ATCATAACAAGAAGCTCGGCTCGTCGGCTCAGGTACGCGATGACGGCAGCAAGAAGGGCT
CCTCGCGGGATTCAGATGAGGAGCCAGGTGAGATTAGGCCAGAGAGCAGCAGCACTGGCA
GTGCAAGGAAGAGCAGGGCAACAGAGCCTGAGAACAGCAACCACAAGCACCAAGCTGATA
CATGTGATCAAACAGGTTCTAAGAGTCGCAGGAAGGGAGAGGCAAAGAGTTCTGGCAGGC
ATTTGTCAGGAAGGAATCGTGACATCTCGCCAATGACACGGGATCGACATGAGAGGAGCC
CAGGGATCTTGGGGCGCTTTCCTCATGATCGCCTCCGCCATGACAGGAGCCCAAGCCGCT
TGGAGCCCTCCCCACGGGACCGCGGTCGCCACTATGACAACAGAGACCGCAGCCCATACA
TTTCTCCACGCCACAGAATGCGCCCATCCCATTACAGGGATAACACACCGAGCCGTGGTG
AGATGCACCATCACAGGGATAACACACCGATCCGCGTTGATAGTTCTCCTCGGAGATCTC
AGCACGAGGACTTCAGAGACCGAAGCCCATCTCGTCGTGATAAATCACCATCTGAACGAG
GTCGGACTACTGAAAGCCATGAAGCAGGCAAGAAGAGCAGAGGTGCTAAGCTTGAAAACA
ACAGCCTGGAAAAGGCACAACACAAAAGTAAATCAACAAAGCAATCAACTAAGTCTAAGA
GCAGTAGCAATGGAAGTAATGAGAAGATATCCAAGGAAAAGGCAACTGAGACCATTCAGT
ACACTGAGTTGCCACCACCACCCCCTCTACCCCCGCCGCCACCACCTCCTCCGCCGCCAC
CCCCGCCTTTACCGCCTAACATGCCTCCTCCCCTGCCTCCACCACCAGAACCTGAACTGA
ATGGAGCTCCTGCAGAAGATGTCTCAATGGAAGAAGACATGGACATCTGTGACACTCCAC
CTCACACTACTAGCTCAGCACCTGAGCCCACTGAACCACCCGCAAGCGATGTGGGGAAGT
GGTTTTATCTTGACCATTACGGTATTGAGCAAGGACCTTCTAAGCTTGCTGACTTGAAGA
AGCTGGTGGAAGATGGATATCTTCTTTCTGATCATCTAATAAAGCATGCTGACAGCAATC
GGTGGGTGACTGTTGAGAATGCAGCTTCACCACTGGTTCCATCCGAATTCCCCTCAGTAT
ATTCAGATGTCTCAACACAGCTGGTTAGCCCGCCAGAAGCCCCAGGTAATTTACTTGATG
AAGCTCGAGAGGAGGCATCTGGTACTGACCATGAACAAATGAAGGAAGCTTCTGCAGAAG
AGCAGGAAGATTTCTACATTGATGACAGGGTTGATGCATTGATGGATGGATCTATCATGG
TGGATGGTCAGGAGCTTGAGATTCTTGGAG                              
 Intron 2-33,815,7953,816,570776
gtaaaaatgctcccttgtcgtttga..........gccttctgtcatttgtaaattgcag
3ONIVA08G04720.1.exon33,816,5713,816,6151145
AGCTTCTAAATGCACATTTTGAGCCAGTCAACTGGGAAAGCGAAG               
 Intron 3-43,816,6163,816,914299
gtattgaatcagttttctcttcact..........acatgttttaaaattcttatgctag
4ONIVA08G04720.1.exon43,816,9153,818,072111,158
ATCTTTCAAGGTTCCAAGTTAAATTGGAAAGAGATGATGGAACCAAAAGAAGCACTGAAT
TTCCAGATAGCAGGACTGCACACATTTATGGCGTTGTTCCTGCTGAGAGGGATACCTATC
AGCCTCATATTGAGTCTAGTGAATGGTATTCTGGGAGATGGTCATGCAAAGGTGGTGACT
GGAAGCGAAATGACGATTTCAGCCAAGATAAGCCTTACAGGAAGAAGCTTGTTCTCAATG
AAGGCTATCCTCTATGTCAAATGCTAAAAGGGAATCATGAGGATCCTCGTTGGGTCTGCA
AGGATGACCTCTACTACCCTTTACGTGCTAAAAAGCTTGATCTGCCGTTGTGGGCATTCT
CATCAACAGAAGAAAATGATGACACTGTAGATGATGCCAGTAAAAGTGGTGTTATTCCTG
GGAGGTCAGGTCAGACTAAACAACCTCCTAAGGGAGTGAAGGGGACAACGCTTCCTGTCG
TTAAGATAAATGCCCGTGTTGTTAAGGACCAATCCTCTTCTGAACACCGTATAAAGCCCA
AAGTAGCTGATCGGCCACCTTCTAGATCTTCGCGCTCCCATTCAATTGGGACTGATAGGA
GTTCTACCCATGAAGGTTCGTCTCATTCTAAGAAACATCATGAACACGATTCACAAAGTT
TGCACAAGTCCAAGTCTGTTCCAAACATTCCAAAGGACCATGTATGTACTGTTGAAGAAT
TGTCAGTCAAAGTAGGTGACTGGTACTACCTGGATGGAACTGGTCATGAGCGTGGCCCAT
TTTCTTATTCTGAATTGCAAGAATTAGCTAAGAAGGGCACTATCCTTGAAGGGAGCAGTG
TTTTCCGGAAGATTGATAACACATGGCTTCCAGTGCTTAAGGATTTAAAATCTGGTTGCT
CTGCTCGGAATGGGGAGGCTGGAAGTTCTACCTCTGCTCTCACACACTCAAACCAGTCCA
ACTTCCACGAGATGCATCCACAGTTTGTGGGTTATACTCGTGGTAAACTGCATGAACTAG
TCATGAAGTATTTCAAGAGCAGGGAACTTACTTTGGCTATAAATGAGGTCTTGGAACCAT
GGATTGCAACAAAGCAGCCCAGAAAAGAACTAGAAACATTTTTTTCTCACAGTTCAGCTT
CAAAGAATTTTGTGCAAG                                          
 Intron 4-53,818,0733,818,345273
gtactgtatcaggtcttgtccaaat..........tccctttcccttttgattcatgtag
5ONIVA08G04720.1.exon53,818,3463,818,71610371
AGGATGGCGGGTCCACAAAAAGGGCAAGGTTGCTGCCTGATCAAAGTGATGAATATACTG
ATATGTCTGAGGACATTCTTGCCAGTCAGAAGGATGATTGTTGTTTTGAAGACTTATTTG
AGGGGGCTGCTCATGTTAAAGAAAGCCCTCTGAATTCCAGAACGGAAAGTGAAAGCTGGG
GTTTATTAAATGAACATGTGTTAGCAAGAATTTTCCATTTTCTGAGGGCAGACGTGAAGT
CACTTATTTCTTCTGCAGCTACCTGTAGCTGGTGGAACACTGCAGCCAAGTATTACAGGA
GTGTTTGTAGATTCATTGATTTGTCTTCTTTGGGCCCTCAGTGCACTGATAATGTTTTCC
ACGACATCATG                                                 
 Intron 5-63,818,7173,818,80185
gtatgttcgctcatctttctaactt..........tcaaaatcatgtatcttcctttcag
6ONIVA08G04720.1.exon63,818,8023,819,34700546
GCTGGTTATGACATGCAAAATATTAGAACACTTGTTTTAACAGGGTGTTCAAATCTTAGT
TCTCTTGCCCTTGCGGAAGTACTTAAGCGTTTTCCGCACATATCATATGTGCACATTCAA
GGTTGCAGTCAGCTAGGGGATCTTAAAAACAAATTTCAGCATGTAAAATGGATTAAGAGC
TCTTTGAATCCAGATGCATCATACCAGAAAATTAGAAGCTTGAAGCAGATAGATGATGGG
AGCAACAGCACATCCAAAGCTGGAAGGATCTTGACCAGTCAGATGGGTGGTTCTGATGAG
CTTGATGGCTATTTTGCTGATATTTCAAATAGAGAGAGTTCCACCCTTTCCTTTGGACAA
GGGTTCTATAAACGATCAAAGTGGCTTGATATTAGAAAGTCGTCTGCGGTTTTGTCAAGG
GATGCACAGATGAGGCGTTTGATGCAGCGGAAGGCCGAGAATAGCTACCGGAAGATGGAA
GAGTTTGTCATCAACAAACTAAAAGAAATCATGAAGAGCAGTAGATTTGATTTTTTTGTT
CCAAAG                                                      
 Intron 6-73,819,3483,819,43891
gtactatcgaaatcctttaatacaa..........cacggtactttattttctattccag
7ONIVA08G04720.1.exon73,819,4393,819,53902101
GTTGCGAAAATTGAAGTTAGGTTGAAAAATGGATACTATGCTCGCCATGGCTTTAGTTAT
ATCAAGAATGACATCCGTTCTATGTGCCGAGATGCATTAAG                   
 Intron 7-83,819,5403,819,62889
gtaaagtgggtctaaatgaaatgaa..........tctgacatttgatatgccattacag
8ONIVA08G04720.1.exon83,819,6293,820,44520817
ATATAAAGGTCGAAGTGACTTGGGAGATATGAAACAGATTGTCGTGGCCTTCATCCAGCT
AGCAAAGAAACTTGAGAACCCAAGGTTGATTTCTGATAGAGATGGGACAGCAGTTCAGAA
GGACAGTTCTGACATGAGTCAGTATTCTTCAGATCTGAAACTCAAAAAGAAACAGAGTAA
AACTATGTCAGAAAGAAGGGGAGCAAACTGGACTACTGCTGGAGCAGATCCGTCATCTCG
TGCATTTGACCGTGAAATCAAAAGAAGTCTTTCTAAATTAAAGAAAAGGGATATCGATTC
TGGTAGTGAAACATCTGATGATGATGATGGCTACTCTGAAGGTGATGAGACTGAGAGTGA
AACTACTGTTTCTGATACAGAGAGTGATCTTGATGTAAATTCGGGAGCATGGGATTTAAA
GGGAAATGGTATGAAGTTATTTGAATCAAGCGAGTCTTTGACGGATGATCGTGGATGGGG
TGCTCGCATGACAAAAGCAAGCCTTGTTCCCCCAGTGACTAGGAAGTATGAGGTTATTGA
GAAGTACCTAATTGTAGCAGATGAGGAGGAAGTACTGAGAAAGATGCGGGTCGCTTTACC
TGATGACTATTCAGAGAAACTGCTCTCGCAGAAGAACGGCACTGAAAATTTGGAACTACC
AGAGGTTAAGGATTATCAACCTAGAAAAGTACCTGGGGATGAAGTTCTTGAGCAAGAAGT
GTATGGAATAGATCCATATACACATAATCTCCTACTTGAAATGATGCCTACTGAACTTGA
TTGGCCATCCTCTGACAAACATACCTTTGTTGAAGAG                       
 Intron 8-93,820,4463,820,53691
gtttgtcctggtgaatagccatttt..........ttgtactatttttttttcactgcag
9ONIVA08G04720.1.exon93,820,5373,820,72500189
TTGCTTCTGAACACCTTGAATAAGCAAGTGAGGCAGTTCACTGGTTCTGGAAATACTCCC
ATGGTTTACCCCCTTAAACCTGTAATTGAAGAAATCCAAAAGTCTGCAGAGGAGAGTGGT
GACAGACGGACTTCAAAGATGTGCCTTGGAATGCTAAAGGCCATGAGGAACCACCCAGAA
TATAACTAT                                                   
 Intron 9-103,820,7263,820,82499
gtcgcctataggaaggcatgcattt..........actttttctctgcattttctttcag
10ONIVA08G04720.1.exon103,820,8253,820,8960072
GGTCTTGGAGTTGTTTGTAACAAAACGGGTGGATTTGGTGTAGACGACTTTGTCATCGAG
TTCTTTGGGGAG                                                
 Intron 10-113,820,8973,820,98892
gtatgtgatttttacgatcaacaaa..........atttgtgaaattgcaatatctgcag
11ONIVA08G04720.1.exon113,820,9893,821,09900111
GTATACCCTTCTTGGAGATGGTATGAAAAACAAGATGGCATTAAGCATATACAAAACAAT
AGCGACGATCAAGCTCCTGAGTTTTACAACATTATGCTAGAACGGCCAAAG         
 Intron 11-123,821,1003,821,205106
gtattagtgcaatctcaaatttttt..........gttttacctttgttatgataaaaag
12ONIVA08G04720.1.exon123,821,2063,821,30602101
GGAGACCGTGATGGGTATGACTTGGTTTTCGTTGATGCAATGCATAAGGCTAACTATGCG
AGCAGAATTTGTCACTCCTGCAACCCTAACTGTGAAGCAAA                   
 Intron 12-133,821,3073,822,225919
gtaagcttcttaatcttcagattag..........cacgattattaaaatatatttccag
13ONIVA08G04720.1.exon133,822,2263,822,32520100
AGTAACGGCTGTGGATGGTCATTATCAGATTGGAATTTACACTGTTCGACCAATTGCAGA
AGGCGAGGAAATCACTTTTGATTACAACTCTGTTACTGAG                    
 Intron 13-143,822,3263,822,40277
gtgattgccatttctagtttctgta..........tatgaatacattctaattatgccag
14ONIVA08G04720.1.exon143,822,4033,822,4980096
AGTAAAGAAGAGCACGAAGCGTCAGTTTGTCTCTGTGGAAGTCAAATATGCAGGGGCAGC
TATTTAAATTTTTCTGGGGAAGGAGCTTTTGAAAAG                        
 Intron 14-153,822,4993,822,617119
gtaaacttcattcttgtttacagta..........catctactaatatcatttggaacag
15ONIVA08G04720.1.exon153,822,6183,822,78500168
GTCTTGATGGAATTCCATGGTGTGCTCGATCGACATAGTCTTCTGTTACAGGCTTGTGAA
GCAAACTCTGTTTCTCAACAAGACTTAATTGACTTGGGGAGAGCTGGTCTTGGTACCTGT
TTGCTTGCTGGTTTGCCTGGATGGCTTGTTGCTTACACTGCTCACCTG            
 Intron 15-163,822,7863,822,905120
gtaattgtagttgccattttcttaa..........gcggtttatattctttgagagacag
16ONIVA08G04720.1.exon163,822,9063,823,0040099
AAACTTCCTCATGAGATCTTTAAACACAATGTGGACGAGAAGCGCCAGTTTTTCACAGAT
ATAAACATGGATTCCGAGAAGAATGATGCCGAGGTTCAG                     
 Intron 16-173,823,0053,823,07773
gtgggtcttcgaacggctacaagtt..........atctaattctgtcatcactactcag
17ONIVA08G04720.1.exon173,823,0783,823,1310054
GCCGAGGGAGTTCTGAATTCAAGATTACAGAATTTGACTCATACACTTGACAAG      
 Intron 17-183,823,1323,823,256125
gtgcgcattttatgccccctagctt..........ttttatggatcattgttatgttcag
18ONIVA08G04720.1.exon183,823,2573,823,50402248
GTAAGATATGTCATGAGATGCATATTTGGGGATCCCAAGAATGCTCCTCCTCCACTGGTG
AGGCTAACTGGGAGAAGTCTAGTTTCTGCCATCTGGAAAGGGGAAGGCTCGTTAGTTGAT
GAACTTCTTGAGTCAATGGAACCTCATGTTGAGGAAGATGTACTTACTGACCTCAAAGCC
AAAATTCGTGCTCATGATCCATCTGGTTCCGAGGACATTGAGGGAGAAATCCGAAGTTCT
CTTTTATG                                                    
 Intron 18-193,823,5053,823,59894
gtgagtttagaatatattcttgttt..........ggaatctgaccgcccttttcttcag
19ONIVA08G04720.1.exon193,823,5993,823,70720109
GTTGCGTGATGAGCTGAGAACTCTTTCATGCACATACAAGTGTCGGCATGATGCTGCTGC
TGATTTGATTCACATGTATGCTTACACAAAGTGTTTTTTCAGAGTCCGA           
 Intron 19-203,823,7083,823,79588
gtaagtgaaaacttcctcttaattt..........ctgactcaaggatcaccacatgcag
20ONIVA08G04720.1.exon203,823,7963,823,8920197
GATTACAAGACGGTAAAATCTCCACCGGTTCTTATCAGTCCTCTTGATTTAGGTCCCAAA
TATGCAGATAAACTGGGACCAGGCTTCCAGGAGTACT                       
 Intron 20-213,823,8933,824,006114
gtaagacatacccagaaaattattg..........agaaagggttgtatgtcattgccag
21ONIVA08G04720.1.exon213,824,0073,824,0951089
ATGTATCCTCCTTCTATGTGAAGTCAGTAAAACCAACACAAGAGCGAGTCTATGGCAGCA
GAACTGTGAGATTCATGTTAGCGCGCATG                               
 Intron 21-223,824,0963,824,310215
gtaagtgcttaccttttatatgtca..........atgaaactgcgtggttttattacag
22ONIVA08G04720.1.exon223,824,3113,825,5990-1,289
GAGAACCAGGCACAAAGGCCATGGCCCAAGGACCGGATATGGGTTTTCAAGAGTGACCCA
AGATTCTTTGGTACTCCAATGATGGATGCCGTATTGAATAATTCCCCCCTTGACAAGGAG
ATGGTGCATTGGCTCAAGACAAGATCCAACGTCTTCCTAGGCTAGCCAAGGAATTGTAGG
CAGAGGGTATTGGTTTTTTTCCTTTGGAGATTTTAGTCAGACACCATTCTTTTTTCTTCC
TACTCACACCTTTCCTACCTAATCATGGGGATTTAGCTTTTAGATGGCAGGGTAACAACA
GTCTCTCTCACCTTCCCCATTTGTACAGCCCCCTCCTCCCCTTACCTTGTAGAGATGTGT
TCCATTATTAACTGATAGATCCATCATTGATTTAATGTAGCGCCTTTTCCCGTTGCGTAG
AATTGTCACCTCCCAATGTGCAATGTGGATATTCATGTGTAAATGCAAAACAGTAGCAAT
CTTAAATTCCAGTGATATGTTACAGATTGTAGGAAGTGGACGTTGCATTTCTGTTGCTCA
GTTTCGAGCTGTTTGACCTAATAAAAGTTTCAGGAAGTAGTTTTTTGCAGGAGTGATACA
GAAGTGGTCTGTGATAATGAATGCTGGGTGAAAGTTTCGCATGAGAGGAGAAAACATATG
CTTCACCTTGAGCTTGTGCAGTTAGGATAGATGTGCAGGCAAATGGGTAGCAGCTGCTTT
CTGTTTTTCCTATCATGTTCAGTTCATGACATTTTTTTTTGTGTGTGTTGGTGGCTTAAT
ACATGAATGTCAGAATGGGATTCCTTGAGCCTCTTTTCTCCTTTTGGGTGGACAATAAAT
CAATAATGCACCCATATGTACACTCTGCTGACTGCTGGAAGCTGGTCCTTGAATGAACTG
CCTGCTGCAACTCTTTTGGAGCCATGAGGAGTAATGTCTCTTTTTGGAGCCATGAGGAGT
AATGTCGTGTAAATGCTGACCCAGTATCGACTATGGTGAAGGGCGTCAAGGCAGCTGATT
AATTAGGCCTTTGCTTCCAAGGGTGAATAGTACCACTAGCACCCCACAAATCTGAGAGGC
TTGTGATGTTTCTACACAATACTTCTTTTTCTAAACCCTATTCATAATGGTTAATCTATT
CTTATAAACCACTGTCCATAATCCCAGCTTGGGAGCAGGAGCTGATGTAGTCCAGCAGGG
CTGAATCCAGAACCAAAATTGGCATGTCTCCTATACCTATCAATCACACATACTACTAGT
TTGTTTATGTGATAACATGGTCAAATCAA                               
3' downstream sequence
atgctaatggaatttctcaaaactttactcttatgtccgcacataacatg..........