Oryza nivara (Oryza_nivara_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 7: 24,443,168-24,448,695 forward strand.
This transcript has 8 exons, is annotated with 34 domains and features and maps to 49 oligo probes.
This transcript is a product of gene ONIVA07G27050 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........gagtcgtgtcgagttcaagtgttatctgtcgcacgctcgctcgctcaata
| ||||||
| 1 | ONIVA07G27050.1.exon1 | 24,443,168 | 24,443,175 | 0 | 2 | 8 |
ATGTGTGC
|
| Intron 1-2 | 24,443,176 | 24,443,218 | 43 |
gtgacctgggcaagtggcggtagcaagaggagggtataaatag
| |||
| 2 | ONIVA07G27050.1.exon2 | 24,443,219 | 24,443,449 | 2 | 2 | 231 |
GCGAGGGTCTCATCACCGCCGCCGCCGCCGCCGCCTCCTCCTCCTCTACACTGCTTCTTC CTCTCTCACTCGCACTCCCCCACTTTTCCCAACCCAAGAAGCTAATCCTCCTCCAACTCC AAGGGGAAACGGAAACCTAGCCGCCACGCCAAGCATCTCGTCTCGTCTCCTCTCCGCGGA GGAGGAAGATCCCTTCCTTTCCCTCGCCGGTGAGGTCGCCGCCCGCCACAG |
| Intron 2-3 | 24,443,450 | 24,443,573 | 124 |
gtaagcatcgcatcgcatcgcatct..........tgaggtgcttacggtttctgcgcag
| |||
| 3 | ONIVA07G27050.1.exon3 | 24,443,574 | 24,443,812 | 2 | 1 | 239 |
GGGCTTGCTCTCCATGCTTCCCACCAACAAGAGAGCCGCCGGCACGGACGACGACCGCCC CACCGACCCCAAGAGACCCAAGGTCGCCCAAAACGGGAGCACGAATGGAGTGGTGGTGCC GGAGATTGACGAGGACCTGCACAGCAGGCAGCTCGCCGTCTACGGGAGGGAGACCATGCG CCGCCTCTTCGCCTCCCATGTCCTCGTCTCTGGCCTCAATGGCCTCGGTGCAGAGATTG |
| Intron 3-4 | 24,443,813 | 24,444,077 | 265 |
gttcgtctttctatccactcactct..........aaacaaatgtgttgcgttcctgcag
| |||
| 4 | ONIVA07G27050.1.exon4 | 24,444,078 | 24,444,295 | 1 | 0 | 218 |
CCAAGAACCTTGCTCTTGCTGGGGTCAAGTCCGTCACCCTACATGATGTGAAAAACGTTG AGATGTGGGATTTGTCTGCCAATTTCTTTTTATCTGAAAATGATATTGGCAAAAACAGGG CTGCTGCTTGTGTATCCAAGCTGCAAGAGCTCAACAATGCTGTTCTTATCTCTGCTCTAA CAGAGGAACTGACCACAGACCACCTGTCTAAATTCCAG |
| Intron 4-5 | 24,444,296 | 24,444,396 | 101 |
gtttgttgcacttgcagtatcttgc..........acccatagttttatctggatggcag
| |||
| 5 | ONIVA07G27050.1.exon5 | 24,444,397 | 24,445,191 | 0 | 0 | 795 |
GCTGTTGTTTTCACCGATGTAGGTTTAGACAAGGCCTACGAATTTGATGACTACTGTCAC AGCCACTGCCCTCCTATTTCCTTCATCAAAGCTGAAGTTTGTGGTCTCTTTGGTACTGTC TTTTGTGACTTTGGACCAGAGTTTACCGTTCTTGATGTTGATGGTGAAGACCCACATACT GGTATAATTGCATCCATCAGCAATGACAACCCTGCGTTGGTGTCCTGTGTTGATGATGAA CGGCTTGAGTTTCAGGACGGTGATTTTGTGGTTTTCTCTGAGGTCCATGGTATGGCTGAG TTAAATGATGGAAAACCAAGGAAGGTTAAAAATGCAAGGCCATTTTCATTTTGCATTGAG GAAGATACAACTAAATATGACATGTATATAAAAGGTGGAATCGTTACACAGATCAAGGAG CCAAAGATACTACGATTCAAGTCACTAAGAGATGCTATGAGAGATCCTGGAGATTTCCTT CTGAGTGACTTCTCTAAGTTTGAACGTTCCCCCGTGCTTCACCTAGCATTTCAAGCTCTG GATAAGTTTAAGAAAGAATATGGACGCTACCCTGCTCCTGGTTGTGAGCAGGATGCTCAA AGTTTCCTTAAGTGTGCTGCTGATATTAACGAAGCCTTAACTGATCACAAGCTGGATACA ATTGATGAGAAGTTATTCAGACATTTCGCAAGTGGTTCTCGAGCTGTTTTGAACCCTATG GCTGCAATGTTTGGTGGTATTGTTGGTCAAGAAGTTGTGAAGGCATGTTCAGGAAAATTC CATCCTCTCTACCAG |
| Intron 5-6 | 24,445,192 | 24,445,265 | 74 |
gtttgtgttatgactcatctgttgc..........tctgatagaactcaattttatgtag
| |||
| 6 | ONIVA07G27050.1.exon6 | 24,445,266 | 24,446,134 | 0 | 2 | 869 |
TTCTTCTACTTTGATTCTGTCGAATCCCTGCCAACGTATCCACTTGACTCTGAAGACATC AAACCGTCAAACAGCCGCTATGATGCTCAGATCTCTGTATTTGGTTCCAAACTTCAGAAG AAACTGGAAGAGGCAAATACTTTTGTTGTGGGGTCTGGTGCCCTTGGATGTGAATTTTTG AAGAACCTTGCTTTAATGGGAGTGTCTTGCAGCCCTAAGGGAAAGCTAACTATAACAGAT GATGATGTCATTGAGAAAAGTAATTTAAGCCGCCAATTTCTGTTCCGTGACTGGAATATC AGGCAGGCAAAGTCTACTGTGGCCGCTGCAGCTGCCAGTGCTATCAACCCCAACCTCTGT ATTGATGCTCTCCAGAACCGTGCTTGTCCAGATACAGAGAATGTGTTCCATGACACGTTC TGGGAGGGTTTAGATGTTGTCATCAATGCGCTTGATAATGTTAATGCCAGGATGTATATG GACATGAGATGCCTGTACTTCCAGAAGGCATTGTTGGAGTCAGGAACATTGGGTGCAAAG TGCAATACGCAAATGGTGATTCCTCACCTTACTGAAAATTATGGGGCTTCAAGAGATCCT CCAGAGAAGCAGGCACCAATGTGCACAGTCCATTCTTTTCCGCACAATATTGATCATTGC TTGACTTGGGCACGCTCTGAGTTTGAGGGTTTTCTAGAGAAGACACCAGGTGAAGTAAAT TCATTTCTCTCTAATCCGGCTCAATATGCTGCTGCCATGAGGAAGGCAGGTGATGCCCAA GCTAGAGAATTGCTCGAGCGTGTTTCTGAATGTCTTGGCAAAGAGCGTTGCAGTTTGTTT GAGGATTGCATAAGATGGGCCAGACTGAA |
| Intron 6-7 | 24,446,135 | 24,446,376 | 242 |
gtatgtctctcctgcttgccattgc..........tttccttttgttttgttcttggcag
| |||
| 7 | ONIVA07G27050.1.exon7 | 24,446,377 | 24,446,809 | 2 | 0 | 433 |
ATTTGAGGACTATTTCTCAAACCGTGTGAAGCAGCTCACATTTACCTTTCCTGAAGATGC TGCCACTAGTACGGGTGCTCCTTTCTGGTCTGCCCCCAAGCGCTTCCCTCGCCCACTGCA ATTTTCAGTCTCTGATCCCTCCCACATTCACTTTATTATGTCTGCTTCAATACTGAGAGC TGAGTCATTTGGAATTGCTATACCGGACTGGGCAAAGAACACAAGTAAGCTGGCTGATGC AGTAAGTGAAGTTGCTGTTCCTCAATTTGAGCCAAAGAAAGGGGTCAGTATTGTGACAGA TGAGAAAGCTACTAGCCTTTCCAGTGCCTCAGTTGATGATGCTAGTGTTATTGATGACCT TCTTGCTAAGTTGGAAGAATGTGCCAAGAGGTTACCTCCAGGATTCCAAATGAAACCTAT CCAATTTGAGAAG |
| Intron 7-8 | 24,446,810 | 24,447,322 | 513 |
gttagtattttaagtacaagtttct..........attaaatttcgctttgcttttacag
| |||
| 8 | ONIVA07G27050.1.exon8 | 24,447,323 | 24,448,695 | 0 | - | 1,373 |
GATGATGACACCAACTTTCACATGGATCTGATCTCTGGATTTGCAAATATGCGCGCAAGG AACTACAGCATTCCAGAGGTTGACAAATTGAAGGCTAAGTTCATTGCTGGAAGAATCATC CCAGCTATTGCAACTTCAACAGCGATGGCGACAGGACTGGTCTGTCTTGAGCTATACAAG GTTATTGCTGGCGAGCACCCCATTGAAGACTACCGCAATACATTTGCGAACCTGGCACTG CCACTATTCTCAATGGCTGAACCTGTTCCACCCAAGGTGATGAAGCATCAAGACATGAGC TGGACTGTATGGGACAGATGGTCCATCAAGGGCAATCTGACTGTTGCTGAGCTCCTGCAA TGGTTCAGCGACAAGGGCCTTACCGCTTACAGCATTTCCTGTGGCACTTCGCTGCTGTAC AACAACATGTTCGCAAGACACAAGGAGAGATTGAACAAGAAGGTGGTAGACGTGGCCAGA GAAGTCGCCAAGGTGGATGTTCCTGAATACAGGAAGCATTTGGATCTTGTGGCGGCCTGC GAGGATGATGATGGAAACGACATCGATATTCCTCTTGTCTCAGTTTACTTCCGATAGCTA GTCAAACCTCCCCTAGCAGCTGAGCTGATCAGAGGAGAACAAAAAGAAGAAAAGAAAACA TGGCTACTCTTAAGATTAGTTCGGTCATAGACTCATTAAGATTAGTTCACTTATAGACTC GCAAAAAATGAAAAATATGATATAAGTTGCTTATTTGGCGTTGCTTGATCCCTTGGTATT TATTTATTCGTAGTGCTCATGACATGCAGTAGTTTTTCATTTTCTGGTGTCATTGCATAT GCTGCTTGTTCATTCACTCATTCAGGAGTAGTGCTCCTAACGGTCGATAATGTAGTAGAT CTTGGATGATGACGACTTAAATGTAGGTCAATTCCAGGGGAGTTGTGCGTTAAAGAAATG CGGTTGCTAGTCATGGTCAACTACTGGGATATGATGGCCCCAAATCCAATCCAAAATTTA TGTCAAAATATAGTGATGTTTGATTTTCCTTCATTTGGATTGAGATCAAATGCAGTCCTA ACTAGGACTTCCTTTCCTAATAATACTGTTTTAATTCAGAAATTCCTGAGTTCATCTTCC TATATGTAAGCCTGCAACGATTTGGAGTAGGCCCTCATATGTCTATGACACATGGATCTA GTGACAAATCCTTTATCATCACTCATAAAAGTTGTAAATAGTTAATTATTCTCGATTTGG AAGGATTTATATTTTGTTTCAGTTGCAGCTCGCACTTGGAATGAAACGATGTTATGCATA GTAGTATGCACAGTAGCAGTAGGAGGAGGAGTATTATTTTGAGATGCCAGCAA |
| 3' downstream sequence |
ccggagacgaataaaaaagaataaagagaagatgagcggaagtacaaagg..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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