Oryza nivara (Oryza_nivara_v1.0)
Description

SPX (SYG1/Pho81/XPR1) domain-containing protein [Source:Projected from Arabidopsis thaliana (AT1G02860) TAIR;Acc:AT1G02860]

Location
About this transcript

This transcript has 7 exons, is annotated with 11 domains and features and maps to 45 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA07G25630.1915304aa
 
Protein coding
A0A0E0I5J5 Ensembl Canonical
-ONIVA07G25630.2906301aa
 
Protein coding
A0A0E0I5J6 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
  • loading
Show/hide columns
  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ccaccctttcccctctcctctcctctcctcgcttgtatatattcggcgcg
1ONIVA07G25630.1.exon123,349,19623,349,1820015
ATGCCGTCGCAGCCG                                             
 Intron 1-223,349,18123,348,699483
gtgccttcgtttcaccctgctcgga..........ttgccttaaatttggattcatgaag
2ONIVA07G25630.1.exon223,348,69823,348,53901160
TTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGG
CTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAAC
GACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTG                    
 Intron 2-323,348,53823,347,3531,186
gtgaataaagctactatacctttca..........ctgacaaattcctatcaacatgcag
3ONIVA07G25630.1.exon323,347,35223,347,16810185
TATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTGTTGGCTGCT
TCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCACCTGGCATCAGGTTTCAAGAAATATA
CAATGTGGTTCACCAGCAAGGGTCACAAGAGCCATGGGGCATTGATACAGCAAGGCAAAG
ACTTG                                                       
 Intron 3-423,347,16723,346,666502
gttacttatgcaattataaatgccg..........ttaactaaaagcctctcttttccag
4ONIVA07G25630.1.exon423,346,66523,346,41400252
ATACATTACTCGAAGCAAGGGCAGGAATTCAAAGCTCAAGCCCAGAGTCTGCATATTGAA
ATACTTCAATCCCCATGGCTCTGTGAGCTGATGGCTTTCTACATGAACTTGAGAAGAAGC
AAGAAGAACAACGGTGCTATGGAGCTCTTTGGGGATTGTTCTCTCGTATTCGATGATGAC
AAACCAACAATTTCATGCAACCTCTTTGACTCTATGCGCGTCGACATTAGCTTGACATGT
TCGATTTGCTTG                                                
 Intron 4-523,346,41323,346,172242
gtgagtttgcacttgtcgactgcac..........ttctgaaattcacttgcttttgcag
5ONIVA07G25630.1.exon523,346,17123,346,03400138
GATACCGTGTTTGATCCAGTTGCTCTTTCCTGTGGTCACATATATTGCTACTTGTGCAGC
TGTTCTGCTGCATCCGTTACGATCGTTGATGGGCTGAAGTCTGCCGAGCGCAAATCAAAG
TGCCCACTGTGCCGACAG                                          
 Intron 5-623,346,03323,345,926108
gtataaacaattccttcaattcgat..........caactgacctgatttctcatttcag
6ONIVA07G25630.1.exon623,345,92523,345,8670259
GCAGGAGTCTTTCCTAATGCTGTACACTTGGATGAGCTGAACATGCTACTAAGCTATAG 
 Intron 6-723,345,86623,345,704163
gtaagtctgaactgctcaggatcat..........tttaatatggatcatctattgacag
7ONIVA07G25630.1.exon723,345,70323,345,59820106
TTGTCCAGAGTACTGGGAGAAGAGAATACAGATGGAGCGGGTTGAACGTGTTCGTCTGGC
TAAGGAACACTGGGAGTCACAGTGCAGGGCATTCTTGGGCATGTGA              
3' downstream sequence
ttctaaagttggtggattttttttttctttagaggggcttcatatgtgat..........