Oryza nivara (Oryza_nivara_v1.0)
Description

Regulator of nonsense transcripts 1 homolog [Source:Projected from Arabidopsis thaliana (AT5G47010) UniProtKB/Swiss-Prot;Acc:Q9FJR0]

Location
About this transcript

This transcript has 28 exons and is annotated with 32 domains and features.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA07G13600.151941277aa
 
Protein coding
A0A0E0I131 Ensembl Canonical
-ONIVA07G13600.251311256aa
 
Protein coding
A0A0E0I132 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
  • UTR
Markup
  • loading
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........gaggagggggagcccttcccctcgcccccatccccgccccgcccgctccg
1ONIVA07G13600.1.exon113,841,95313,842,56100609
ATGGCGACGCAGCCGCCCTCCTCCTCCGCCGCCGCCGACCTCTACGAGACGGCCTCGCAG
CCCGACCCGCCCGCCTCGGCCGCCGGCGACGCCTACACCTTCCTCGAGTTCAACACCCAG
GGCGACGACTTCGACTACCCGGACTTCCCGGAGCTCTCCCAGCCGGCCCGATCCGCGCCC
CCCACGTCGGCTCCGGGGGTGCCTGGCTCCGCGGGCTCGCCGTCGCCGTCGTCCTCGTCG
TGGCCGCCCCCGCCTCCCCCGCCGCCGGACGCCTCGCAGGACCCCGATCTCGCGCCGCGG
GAGGCCACCACCCCGCCGGCCTCCTCGTCCTCGCCGTCGCCGCGCGCGTCGGCCAAGGCG
AGGGCGTCCGCCGCGGCGGCGGACGGGCTCGCCTCCGGGGTCGCGGCGCTCAGCTTCGAG
GAGCCGCTCGGCGCCGGCGCCGGGGAGGACGGGTACGACTACGGCAAGGGCGACTTCGTC
GAGCACGCGTGCCGGTACTGCGGGATCCACAACCCCGCGTGCGTCGCGCGCTGCAACGTG
CCGTCCTGCCGCAAGTGGTTCTGCAACTCGCGGGGGAACACGTCCGGCTCCCACATCGTT
AACCACCTG                                                   
 Intron 1-213,842,56213,843,465904
gtgcgtgtccctgtctttttctcgt..........ttacaccgctgtgtattttacacag
2ONIVA07G13600.1.exon213,843,46613,843,71700252
GTTAGAGCAAAACATAAGGAAGTTTGCCTACACAAGGATAGTCCGTTGGGTGAAACAATT
CTTGAGTGCTACAATTGTGGTTGTCGGAACGTATTCCTTCTTGGTTTTATCTCAGCAAAG
GCAGAGAATGTCGTTGTTCTTCTGTGCAGAGAGCCCTGTTTGAGTGTTAATGCATTGAAG
GATATGAATTGGGACCTCAGTCAGTGGTGTCCTCTTATTGATGACAGGTGTTTCTTATCA
TGGCTTGTCAAG                                                
 Intron 2-313,843,71813,843,823106
gttaatgcttcctccctttattatt..........aatttgcaatattttgttctaccag
3ONIVA07G13600.1.exon313,843,82413,843,99400171
GTTCCCTCAGAACAGGAGCAGCTGAGGGCTCGTCAAATTAGTGCGCAACAAATTAACAAA
GTGGAAGAGCTCTGGAAAACAAACCCTGATGCCTCTCTTGAAGATCTTGAAAAACCAGGT
GTCGATGATGAGCCCCAACAAGTGGCTCTGAAGTATGAAGATGCTTACCAG         
 Intron 3-413,843,99513,844,149155
gtttggaatgttcattggttcattt..........caggttttcattttttttttgccag
4ONIVA07G13600.1.exon413,844,15013,844,2000051
TATCAAAATGTGTTTGCTCCACTGATAAAGCTTGAGGCTGATTATGACAAG         
 Intron 4-513,844,20113,844,324124
gtactatgttctgatagtatttcct..........cttgcctcctgttatttttctgtag
5ONIVA07G13600.1.exon513,844,32513,844,4170093
ATGATGAAAGAGTCACAGAGCAAGGACAGCTTGACCGTGCGGTGGGATATTGGACTGAAC
AAGAAGCGCATAGCCTATTTCGTGTTTCCAAAG                           
 Intron 5-613,844,41813,844,582165
gttagcttaagaacttggaagcaca..........atgtggaatcaattttatattttag
6ONIVA07G13600.1.exon613,844,58313,844,6780096
GAAGACAATGAATTGAGACTTGTCCCAGGAGATGAGCTGCGGCTTCGATATTCTGGTGAT
TCTTCACACCCTGCATGGCAGTCTGTGGGTCATGTG                        
 Intron 6-713,844,67913,844,77597
gtatgtgccctagaaacatgtcaat..........aatggtaagggcattattccttcag
7ONIVA07G13600.1.exon713,844,77613,844,8260051
ATTAAACTTACGGCACAAGAGGAGGTAGCACTTGAACTTCGTGCTAGTCAG         
 Intron 7-813,844,82713,844,90983
gtatgaggagtatagctctcacttg..........ccatcataaactttcctgatttcag
8ONIVA07G13600.1.exon813,844,91013,845,02802119
GGAGTTCCTGTTGATTTGAACCATGGATTCAGTGTGGATTTTGTCTGGAAGAGTACTAGC
TTTGATAGGATGCAGGGGGCAATGAAAACTTTTGCTGTGGATGAGACAAGTGTCAGTGG 
 Intron 8-913,845,02913,845,366338
gtgagttagatgcatctatatcgtg..........ttactcttctgttgcttcaacgtag
9ONIVA07G13600.1.exon913,845,36713,845,47520109
GTACATATACCATCACCTTTTGGGACATGAAGTTGAGCATCAAATAATACGTAATACACT
ACCGAGACGCTTTGGTGCACCAGGACTTCCAGAACTAAATGCTTCACAG           
 Intron 9-1013,845,47613,845,848373
gtatgtttttgtgcttctagaaaaa..........ctgatcttgtggtgcatctattcag
10ONIVA07G13600.1.exon1013,845,84913,845,97100123
GTCTTAGCAGTTAAAAGTGTTCTCCAGAAGCCAATTAGTTTGATTCAAGGTCCACCTGGC
ACAGGGAAAACTGTCACTTCTGCTGCGATCGTGTATCACATGGCAAAACAAGGCCAAGGA
CAG                                                         
 Intron 10-1113,845,97213,846,04776
gtataagagtgcatggcatttgctc..........aaccttgtctgatttgaaatttcag
11ONIVA07G13600.1.exon1113,846,04813,846,1190072
GTCCTTGTATGTGCTCCAAGTAATGTAGCCGTTGATCAGTTGGCAGAGAAGATAAGCTCT
ACTGGTCTCAAG                                                
 Intron 11-1213,846,12013,846,420301
gtaaacaataatttatagtttattt..........tagtaactgtggttgcatattgcag
12ONIVA07G13600.1.exon1213,846,42113,846,4920072
GTTGTCAGGCTATGTGCAAAATCTAGGGAAGCTGTTTCATCTCCTGTTGAGCATTTGACA
CTTCATTATCAG                                                
 Intron 12-1313,846,49313,846,58290
gtacattcttgattcttggctagtt..........atgttcctttatgcataaaacgtag
13ONIVA07G13600.1.exon1313,846,58313,846,6490167
GTTCGGCACCTTGATACATCTGAAAAGAGTGAATTGCATAAGCTACAGCAACTCAAAGAT
GAACAAG                                                     
 Intron 13-1413,846,65013,846,71768
gtccttaaactctctcggccattct..........attttcttatattctatttttatag
14ONIVA07G13600.1.exon1413,846,71813,846,86010143
GTGAATTGTCAAGCAGTGATGAGAAAAAGTACAAGGCATTAAAACGAGCTACTGAGAGAG
AGATATTACAAAGTGCTGATGTGATTTGTTGCACTTGTGTTGGTGCTGGAGACCCTCGTT
TAGCAAACTTCCGATTCCGTCAA                                     
 Intron 14-1513,846,86113,846,94989
gtaatactttctttctaatagcagt..........tctttcttctttttttttatgtcag
15ONIVA07G13600.1.exon1513,846,95013,847,0210072
GTTCTTATTGATGAATCTACACAGGCAACAGAGCCTGAATGTCTCATTCCATTGGTGCTT
GGTGTAAAGCAG                                                
 Intron 15-1613,847,02213,847,08766
gtaacaagtaattaattggtggttt..........tgctatatttatactctttctttag
16ONIVA07G13600.1.exon1613,847,08813,847,21600129
GTTGTTCTTGTTGGAGATCATTGTCAACTGGGCCCAGTCATCATGTGCAAAAAGGCAGCT
CGTGCAGGATTAGCACAATCGCTCTTTGAACGGCTTGTTATCCTTGGAGTCAAGCCTTTC
AGGCTACAG                                                   
 Intron 16-1713,847,21713,847,772556
gtaattgttgaatctggtgttctgt..........ctaacataatcatctgttattacag
17ONIVA07G13600.1.exon1713,847,77313,847,92800156
GTACAATATAGGATGCACCCTTGTCTTTCAGACTTCCCGTCCAACTGCTTCTATGAAGGC
ACACTGCAAAATGGAGTAACTGTAAACGAGAGACAGACACCTGGGATTGATTTTCCTTGG
CCTGTTCCAAATCGGCCTATGTTCTTCTACGTGCAG                        
 Intron 17-1813,847,92913,848,034106
gtaccttcttggaccaccaccaatt..........agagactcgtactgattttctgtag
18ONIVA07G13600.1.exon1813,848,03513,848,14800114
ATGGGACAAGAAGAGATCAGTGCCAGTGGGACATCATACCTCAATAGAACTGAAGCTGCA
AATGTTGAAAAGATTGTAACTACATTTTTAAGGAGTGGTGTTGTACCAAGCCAG      
 Intron 18-1913,848,14913,848,24698
gtatgcagtgatgatccctttttca..........tcacattttgtggaatgtattgtag
19ONIVA07G13600.1.exon1913,848,24713,848,3450099
ATTGGAGTTATCACACCTTATGAAGGACAAAGGGCATATATTGTGAATTATATGTCAAGG
AATGGCTCTCTTCGCCAACAACTATACAAAGAAATTGAG                     
 Intron 19-2013,848,34613,848,42984
gttaaccacaaatcatgtatactgt..........catataagatttatacttatttcag
20ONIVA07G13600.1.exon2013,848,43013,848,5070078
GTAGCAAGTGTTGATTCCTTCCAGGGAAGAGAAAAAGATTACATAATCCTGTCTTGTGTT
AGAAGCAATGAGCACCAG                                          
 Intron 20-2113,848,50813,848,856349
gtaatctttgctcttttacttggtt..........atgatatttttttttcacctttcag
21ONIVA07G13600.1.exon2113,848,85713,848,99100135
GGTATTGGGTTTCTTAATGATCCACGCAGGTTAAATGTCGCATTAACTCGTGCTCGGTAC
GGTATAGTTATTCTTGGGAACCCTAAAGTTCTAAGCAAGCAGCCACTCTGGAATAGTTTA
TTGACACATTATAAG                                             
 Intron 21-2213,848,99213,849,534543
gtataagctttccttcagtacataa..........cactcgataatctccatgtgtttag
22ONIVA07G13600.1.exon2213,849,53513,849,6090075
GAGCATGAGTGTTTGGTAGAAGGACCTTTGAACAACTTAAAGCAGAGTATGGTGCAATTT
CAAAAGCCAAAAAAG                                             
 Intron 22-2313,849,61013,849,70091
gtgggtgccttcttccactcttata..........attaacaaagtatatgcttgagtag
23ONIVA07G13600.1.exon2313,849,70113,849,81501115
ATCTACAATGATCGACGACTCTTCCTGGGTGGCGGTCAAGGTGTTATGCAAGGAGCTAGT
TTTGGTGCTGCAGGCACAAACCCAGTGGCAGATAAGAGAAGTGGTAGGGGGAAAG     
 Intron 23-2413,849,81613,849,90186
gtagatagttaattttgtttggttc..........gctcctcttcttttctgaaatgcag
24ONIVA07G13600.1.exon2413,849,90213,850,27210371
GGCATTCCTTTGTTCCATTTGGCCCACCAAATGGGGCTCATAAACCTGGTGTGCACCCAT
CTGGCTATCCTTTACCTCGTATGCCTTTCCCTCCATTTGCTGGGGCTCATTCTCAACCCT
ATGCTATTCCAACCCGGGGATCATTGCACGGACCGATTGGAGCTGTTCCACCTGTGCCTC
AACCTGGAAACAGAAACTTTGGACCTCGTGGAAATACTGGTGGCCCTATTGGTGGGCACC
TTGCTCACCAACAGAGTTCTCAGCAAGCTATGGGAGGCATGGGGTCAGCTTTTAACTTTC
CTGGCCTGGAGAATCCGAGCAGTCAGCCTTCTGGTGGAGGTCCAATGTCCCAGACTGGAT
TGATGACACAG                                                 
 Intron 24-2513,850,27313,850,492220
gtttgtttatttctattaatatatg..........aaaatttggttttgttgttttctag
25ONIVA07G13600.1.exon2613,850,49313,850,5640072
GACTTCTTTGGAGATGATTTCAAGAGCCAAGGATCTCATGTGGCATACAACATTGCTGAT
TTTTCCACTCAG                                                
 Intron 25-2613,850,56513,850,728164
gtacccattgtttcaaatgtctctt..........tctaatataagttgttcatatatag
26ONIVA07G13600.1.exon2713,850,72913,850,85700129
GCTTCTCAAGGAGGCTATGGTGTTGACTACTCTCAAGGACCCCAATCTGGATATCCTGGG
AATTATTTGAACCAAAATGCACACCCAGGGTATTCCCATATGGGTGCAGCAAATGACATT
GTCTCTCAG                                                   
 Intron 26-2713,850,85813,850,957100
gtctgttctatctcggtcataacta..........tgtgtaaccttttagtgttatccag
27ONIVA07G13600.1.exon2813,850,95813,851,07400117
GATCACATGGCCCATGGTTCACATGGAATGTTTACACAAGCGGGATACAATGACCCTTCA
CAAGATGAGTCATCACAGATGCATTTTGGAATGGCTGGTCCTGGTCTTCAGTCTCAG   
 Intron 27-2813,851,07513,851,15581
gtggtttatcctttttcattatctg..........gtgtaggtaacatgatattttgcag
28ONIVA07G13600.1.exon2913,851,15613,852,5960-1,441
CCCATGATGAACCCGCTCTACTCTCAGTCATATGCTCATTACAACACCCAACCGCAGTCT
CTCCAACCTCCTCCCCAGTGATCAGGAAAGCTTGTGATATAATTGCTGAAGCCGCATTAA
GTTTTGGAAGTTTGATGGGTTGTATCCTTGGCCCACAGCAGCTTGGTTGTGCCTTTCTGC
ACTGTAATGCAGAAACGATGGTGCATAGACATCAGTTGCAAGTATTGAGCACAAGCATAT
GTTGGAGCACTACATGGATATTTATTGAGGCAAGCTTGTACAAGATGGCTATGGCTGTCG
ACCATTGACCATTGCTGAGGAGCACAAGGATTGCAACACATCTCTTTCTTGTCATGGTAG
TTCACAGTGGGGCTTGACAACAAGAGGTGGCAACTTGTGCACTGAGAGATGCTGACGACG
CTACCCACATCGCTTCACCTGTATAGAAGGCAAAATGGAGCTTATAGTGGTACGATGTCA
ATACTTCAGGATTGGCTGGCGCCGTGAAGTCTAAGGTGCAGCCGCTATCGCCTGCCTCCA
TGGTACCACGAAAACGCTTGCAGATTGGCTTTGTATAGGGGTATAGATGGGGGGGTGGCC
AGCCCTTTCAGATCTCTCGCACATGGCCATTATATTTATCTGAACATTATGTATGCTTTC
TTTATAGTTTTTGATATTTAGGTTCACAGAAATGATGTTTGGTGATCTTGCCTGAAAGAA
CGAATGCTAGAGCTTGTAGTCATTGATGGAGATCGCGTGATTTTCTTTTATGGATCAGCT
GTCATTTTATGGAGCTGGCTGGATGCTGGTAAACAAGTGATGGGTTTTCTGCGTGGTTGA
TTCCACAACCGTGAGAGCAAATGTTCTGTCACATGTTTTGATAATACTATATTTGGCCTG
TGTTCTGCTGCGATTGTTTTTCATGTGTTTAGTACCAGATTGCAAGTGCCTATTTTATTT
GTTCTCTGGATTGAAGGCTTAAGTTTTGTTGGGTATTTGGGTAGTCATGTAATCGTGCTC
ATGAATGGTGACATTTTGTTGAGGTGCAGGCTCTTGACTGAACGGTGGGAGCCGTATTGG
TTACGTTTGGAAATCCTGTGAGTCACCAGCGTTTACAAAACCACGCGATCATCACATGTG
GTAACCTTAGTTTTTGAATCCATGTTTAATTGATCGCATGTGGTAACCTTAGTTTTTGAA
TCCATGTTTAATTTTGTGGTAACCTTAAACATGTGGTAACCTTAAATTGTGGTAACCTTA
TGGTTTTCACGGTAGTCGTGTGGTTACCGTGGTAACCACATGGTTTATTACGCTTTATGG
TGGGGGTGGTGGAAACTCCACCTAAAACGGTTTTGTGAACCCTGATTGTGGTGTGCTAGT
AAGCTTTCTAAATGGTAAAATCTAAACCGAGAAGCCTCTCGGTTTAATGTTAACCAGCAA
C                                                           
3' downstream sequence
gatcaattgtgagaagaattactgctacacgtgctgatgtgcgtgctgtt..........