Oryza nivara (Oryza_nivara_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 4: 15,002,759-15,006,678 forward strand.
This transcript has 5 exons and is annotated with 18 domains and features.
This transcript is a product of gene ONIVA04G12140 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........tcaaatcactaattaaatatattttcataataaatttgttttatgttgaa
| ||||||
| 1 | ONIVA04G12140.1.exon1 | 15,002,759 | 15,004,127 | - | 1 | 1,369 |
AATGTTATTACTTTTTTCTACAAACTTGGTTAAATTTAAAACAGTTTGACTTTGACCAAA GTCAAAACGTCTTGTAGCCTGAAAGAGGGAGTATCAATTAACCATGCCATATGCCATGAG ATAAATTAACCATGGTTTTGTTTTCCTATTTTTCTCCTTTTATTTGATTGGATGGTTTTA CAAAGAAGGGTTAATTAGATCTATGTCATTAAAAATATACTGGTTTTAAAATATACCATT AGTATTCACGTATTCAAAACTATGTCATTATAATTTTACATATATTCCCAAAGAAGCTAT AAAGAAACCATTCTTTTCTAGGAGGATGGGACATGATCGGTTTTCTCATACGCTCAGGTG AAGGAAAAGAAGCTTTAGGCTCTGTTGGGAACCCATCCCTCTGGTACGAAAAACGAAGCA GTCCATTAGCACATGATTAATTAATTATTTGCTAATTTTTTTTTCAAAAATGGATCAATA TAATTTTTTTAAGCAACTTTCGTATATAAACTTTTTGCAAAAAACACACCGTTTAGTAGT TTGAAAAGCGTGTGCGCGGAAAATGAGATGGGGAGTTGGGAACTCCAGGAAACGAACATA GCCTTAGGATGAAGAGGAGAACGACTCTTCTTTTTAGTGTGAGAAGAAGGGAAGTGATGG TAGGAATCTATAAAAGTCGAGTTTCTCGATCTCTAGATTTAGTATATTTTCTGGATTCTA TATCTTCTGATTTTTAAAATCGAGGTGAAAAGCTGATTCTCCCGTTTAACCCGGAGTAAT TGTCAAGTTATTAGGCCAAAATTTCAAACAGGCCGAATTTAGCGACGACTATTCGGATAC GGCCCAAGTAAACGACGAGCCCACAGGGCGAGTGAAACCTAGGGCCCGTTCCAACTACTG GGTCGTCGCTTCCACTTCCAGAGCCCCCTGACAAACGGGACCCACACTATATCTCCATGC CCACCGGGCCCCACACCTAACCCAACCTTCAAATACTCAGAAAAAAAAAACTCCGTGAAA TTTACGCGAGAGCCCCTCCGCCTTTTTTTCCTTCTCCAACTTCCGCTTCTAATCTCTCTC CTCCTCTCCGCGGCGCCACTCTCCTTCCGCCGCCGCCGCCGCCGCCGACGACGACGACGA CCTCCTCCTCCGGGTCGACGAAACCCTAGCCGCGGGGCGGAGGCCCGCCGCTTCCGGCTC CCGCTCCTCCCTGCCGAGTTCCCGCGAACCCTTCGCTGCCGGTGAAGGAAGTCGAGGATG GACGGCGGCTACGGCTCGGTCACAATCGTCCACGACGCGCGCTCCCCCGAGGACGTCTTC CAGGACTTCTGCGGCCGCCGCTCCGGCATCGTCAAGGCCCTCACCATCG |
| Intron 1-2 | 15,004,128 | 15,004,260 | 133 |
gtacatctccgtttctctctctcgc..........tttttgtggtttcgttgttgcacag
| |||
| 2 | ONIVA04G12140.1.exon2 | 15,004,261 | 15,004,293 | 1 | 1 | 33 |
AGGTGGAGAAGTTCTACAAGCAGTGCGACCCTG
|
| Intron 2-3 | 15,004,294 | 15,005,116 | 823 |
gtgagtctcctccgttgcttctaat..........taaacatgtttctttattttgccag
| |||
| 3 | ONIVA04G12140.1.exon3 | 15,005,117 | 15,005,345 | 1 | 2 | 229 |
AGAAGGAGAACTTGTGCCTCTATGGACTGCCTAATGGAACCTGGGCAGTGACTCTACCAG CTGATGAAGTTCCTCCTGAACTACCAGAGCCAGCCCTCGGGATAAACTTCGCTCGTGATG GAATGCAGGAAAAAGATTGGCTGTCCCTGATAGCTGTCCATAGTGATTCATGGTTACTGT CTGTGGCATTTTACTTTGGGGCTCGTTTTGGATTTGATAAAAAGGCCAG |
| Intron 3-4 | 15,005,346 | 15,005,833 | 488 |
gtttgcttctaattcatttttttcc..........aagaggcatttgaatatggatgcag
| |||
| 4 | ONIVA04G12140.1.exon4 | 15,005,834 | 15,005,951 | 2 | 0 | 118 |
GGAACGGCTCTTCATGATGACCAGTAGTCTCCCCACTGTCTTTGAAGTTGTGTCAGGAGG TGTGAATACACAATCAAAAACCGCCAACGGCAGTAGCAAAAACAAGTCAGGCTCTAAG |
| Intron 4-5 | 15,005,952 | 15,006,034 | 83 |
gtaacatatgtctaacatttcatgg..........ttattcattgtcctttctatttcag
| |||
| 5 | ONIVA04G12140.1.exon5 | 15,006,035 | 15,006,678 | 0 | - | 644 |
CCACCAAAGCGGCCCAATTCTGACAGCAAGCCACAGAGGCAGGTCCAGGCAAAGTATGAG GAAGAGAACGGCGGCAGAGGAAATGGAGGTGATGAAGATCAAGCTGAAACCATTTGTGGC GCCTGTGGTGAGGCCTACGCAAACGGCGAGTTCTGGATTTGCTGTGACATTTGTGAGACC TGGTTCCATGGCAAATGTGTCCGAATCACCCCTGCCAAGGCGGAGCACATCAAGCATTAC AAGTGTCCTGGCTGCAGCAACAAGAGGACCAGAGAATGAGCGTCCATTTTTTCTTTCTAA TGTGATCCTGATAGTAGTGGCAAAAAATAGATAGTAGTTTACCCGTGAACTTGGGGAACC TCAATTCCTACTGGGTGACCGTCGTTGCGGCAGCCCTGGTTGCCCCGCTGTATTAGTAGT AGCTACGTTACTTCTTGTATCATACTGGACATAGTTGGTAGTGCCACAGTAATAGTAGTA TCAATAGGCCATCTTCTGCCTCCTTGGTTGGATGGATTGGTTAAGTGTCTAAACTCTCTG ATTAACGATGTGATTTTTTAGTCTATGCCTGTATGGTAATGCCTCCGGTTCTTGCCTTCT GTTGTTATTAGATTGTTGGTGGGAAGCATGTGTTCAGTGGAGAA |
| 3' downstream sequence |
tatatgttgcgttttgctaaagcattgcaatgccttcttaatggcaacca..........
|
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Ensembl Plants release 62 - September 2025 © EMBL-EBI EMBL-EBI
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