Oryza nivara (Oryza_nivara_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 3: 35,713,097-35,716,199 reverse strand.
This transcript has 7 exons, is annotated with 12 domains and features and maps to 61 oligo probes.
This transcript is a product of gene ONIVA03G43570 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........aaagaaaatgaatacccagtcttagttgagtcttttgtaaaaaaaaaaaa
| ||||||
| 1 | ONIVA03G43570.1.exon1 | 35,716,199 | 35,715,602 | 0 | 1 | 598 |
ATGGAACCAAAGAATGCAATTGCACTGGATGAACATGTGCTGGATTCTACTATCCGCAAG AGGAAGCGTGTGGGTGCTACTCAATGTGCTGAGGCCAATGACGCCCCCAACCTCTCTCAG AATGGTCCAAAACAGAATCTCGCTTTATTTCCTGATTCGACTGGACATAAGAAGTCCAAG ATGATGTGCTCTGCCGATGACATTCTGGAGAGGTACAATAACTTCAAGATAAGCGGGATG CCTGTTCGTGTGATGTCTCACCAACATGGTGGATGGAGAGACTTCCCAGAGGATGTTGTC AATTCGGTACAGCAGAGCTTCCAGTTGAAGAGGCCAATTACTAGTGCAGTATTCCAGAAC AGGCACATCCTGTTGGACTTCATGCAGATGGTTTGTTTAGATTCTGTGATGGCCATAAGC AAGCCAATTGCTTGGATCGATGATCATGGTAAATGCTTCTCTCCGGATTCATGTGCTGGA GTAATACCATCTGAACCTCTGCAGCATGGAAAAAATGAGTTCTTGAAAAGTTCTCATGAT CTAAGCAGTAGTTATGAAGCTCATGAACATGATGGGATGTCTGCAGCTGAAAGCTCAA |
| Intron 1-2 | 35,715,601 | 35,715,509 | 93 |
gttcagcgtcttttgatgcagtgct..........aaggtactcaatgaaagtggtgaag
| |||
| 2 | ONIVA03G43570.1.exon2 | 35,715,508 | 35,715,148 | 1 | 2 | 361 |
TTTCTGGGGAAAATAAAAAGGGCCATTTAAGCCGTATGAATGAAACTGCTGATGGGGCCA TGCAAGCTCCTCGTAATAATCAAAGTGGCCAGCGTGCTGATTCAGCTGTTCGGAATTTGT TGTTTCAAGGATCAGGCCATCTATTTACTGAAAAAGACATCATCGGTATTTATAGAACCC CAATGCTAGATCAACTTGGGAGGTCCCGTTATAGTCTTTTCCAGAAGGAGGTACAAGTCA CAAAAAATCAACGGGGAAATGCAAATGAGCGTTATGCATGGCTTGCTTGCACTAAGGGTA CTATGGAGGAGATGATGATGAATGGTGCTTTGGAAATAGCAAAACCTCTGCAGGGTCCAA T |
| Intron 2-3 | 35,715,147 | 35,714,987 | 161 |
gtatggtgttggggctcatcttgct..........tgtcttacttgaagtttgtccacag
| |||
| 3 | ONIVA03G43570.1.exon3 | 35,714,986 | 35,714,745 | 2 | 1 | 242 |
TGTTGGTTTATCTGATATTGACGAAAATGGAATCATAAGGATGATGTTGTGCCGTGTTAT AATGGGGAATGTTGAGGTGGTTTTCCCTGGATCAAATCAATGCCAGCCAACCAGTGAAAG TTTTGACAGTGGTGTGGATGATCTCCAAAGGCCAAAGCATTACATCATATGGGATGCTAA TGTGCATAAGCACATTTATGCTGAATATGCTGTTATTATCAAAGTACCTTACATGAACAA TG |
| Intron 3-4 | 35,714,744 | 35,714,640 | 105 |
gtactataccatgttttttcccctc..........attactgtatgctatttggttacag
| |||
| 4 | ONIVA03G43570.1.exon4 | 35,714,639 | 35,714,578 | 1 | 0 | 62 |
GAGATACTGCATCAAATATCTCTGAGATAAGAAATTCTGGTGCACTAGACAATCCAACCA AG |
| Intron 4-5 | 35,714,577 | 35,713,829 | 749 |
gtatgcatattatggtttagctggt..........tttgttgcttgcttgttgtgagcag
| |||
| 5 | ONIVA03G43570.1.exon5 | 35,713,828 | 35,713,643 | 0 | 0 | 186 |
GATGACAGTCTACAGACCATTGCGTCTTCAGGTGATGAACAACAAGCATGTATGCTTGGG CGTGCTCCAAGTCCAAGGTCTCCTAGTTCACCTTGGATGCCCTTTTCAATGCTTTTTGCT GCTATTTCCGCTAAAGTACCCCGTTCGGACATGGATCTGGTGCATAAATATTATGAAGAA TTCAAG |
| Intron 5-6 | 35,713,642 | 35,713,552 | 91 |
gttatttgtccttcctttggagatt..........ggtatggtttttgatgttaaaatag
| |||
| 6 | ONIVA03G43570.1.exon6 | 35,713,551 | 35,713,456 | 0 | 0 | 96 |
AGGAGAAAGATAAGCAGGCCTGACCTAGTGAAGCAGCTGAGACAGATTGTTGGTGACAAG CTTTTGGTTTCTACAGTAGTGAGACTTCAGCAGAAG |
| Intron 6-7 | 35,713,455 | 35,713,166 | 290 |
gtacttcttttttactgtgctaact..........tacttactattgatacctgccgcag
| |||
| 7 | ONIVA03G43570.1.exon7 | 35,713,165 | 35,713,097 | 0 | 0 | 69 |
TTGCCACCCATGGCAGCAACTGAACAAGCGCCAAGAGCACCTGGAAGGGGAGGAGGTGCT AGTCCGTAA |
| 3' downstream sequence |
ttaaaaatgacagtttgccgacataacaagctgtggaggagtcgggttga..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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