Oryza nivara (Oryza_nivara_v1.0)
Location
About this transcript

This transcript has 7 exons, is annotated with 12 domains and features and maps to 61 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-ONIVA03G43570.21776591aa
 
Protein coding
A0A0E0GWQ8 Ensembl Canonical
-ONIVA03G43570.11614537aa
 
Protein coding
A0A0E0GWQ7 -
-ONIVA03G43570.31536511aa
 
Protein coding
A0A0E0GWQ9 -
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........aaagaaaatgaatacccagtcttagttgagtcttttgtaaaaaaaaaaaa
1ONIVA03G43570.1.exon135,716,19935,715,60201598
ATGGAACCAAAGAATGCAATTGCACTGGATGAACATGTGCTGGATTCTACTATCCGCAAG
AGGAAGCGTGTGGGTGCTACTCAATGTGCTGAGGCCAATGACGCCCCCAACCTCTCTCAG
AATGGTCCAAAACAGAATCTCGCTTTATTTCCTGATTCGACTGGACATAAGAAGTCCAAG
ATGATGTGCTCTGCCGATGACATTCTGGAGAGGTACAATAACTTCAAGATAAGCGGGATG
CCTGTTCGTGTGATGTCTCACCAACATGGTGGATGGAGAGACTTCCCAGAGGATGTTGTC
AATTCGGTACAGCAGAGCTTCCAGTTGAAGAGGCCAATTACTAGTGCAGTATTCCAGAAC
AGGCACATCCTGTTGGACTTCATGCAGATGGTTTGTTTAGATTCTGTGATGGCCATAAGC
AAGCCAATTGCTTGGATCGATGATCATGGTAAATGCTTCTCTCCGGATTCATGTGCTGGA
GTAATACCATCTGAACCTCTGCAGCATGGAAAAAATGAGTTCTTGAAAAGTTCTCATGAT
CTAAGCAGTAGTTATGAAGCTCATGAACATGATGGGATGTCTGCAGCTGAAAGCTCAA  
 Intron 1-235,715,60135,715,50993
gttcagcgtcttttgatgcagtgct..........aaggtactcaatgaaagtggtgaag
2ONIVA03G43570.1.exon235,715,50835,715,14812361
TTTCTGGGGAAAATAAAAAGGGCCATTTAAGCCGTATGAATGAAACTGCTGATGGGGCCA
TGCAAGCTCCTCGTAATAATCAAAGTGGCCAGCGTGCTGATTCAGCTGTTCGGAATTTGT
TGTTTCAAGGATCAGGCCATCTATTTACTGAAAAAGACATCATCGGTATTTATAGAACCC
CAATGCTAGATCAACTTGGGAGGTCCCGTTATAGTCTTTTCCAGAAGGAGGTACAAGTCA
CAAAAAATCAACGGGGAAATGCAAATGAGCGTTATGCATGGCTTGCTTGCACTAAGGGTA
CTATGGAGGAGATGATGATGAATGGTGCTTTGGAAATAGCAAAACCTCTGCAGGGTCCAA
T                                                           
 Intron 2-335,715,14735,714,987161
gtatggtgttggggctcatcttgct..........tgtcttacttgaagtttgtccacag
3ONIVA03G43570.1.exon335,714,98635,714,74521242
TGTTGGTTTATCTGATATTGACGAAAATGGAATCATAAGGATGATGTTGTGCCGTGTTAT
AATGGGGAATGTTGAGGTGGTTTTCCCTGGATCAAATCAATGCCAGCCAACCAGTGAAAG
TTTTGACAGTGGTGTGGATGATCTCCAAAGGCCAAAGCATTACATCATATGGGATGCTAA
TGTGCATAAGCACATTTATGCTGAATATGCTGTTATTATCAAAGTACCTTACATGAACAA
TG                                                          
 Intron 3-435,714,74435,714,640105
gtactataccatgttttttcccctc..........attactgtatgctatttggttacag
4ONIVA03G43570.1.exon435,714,63935,714,5781062
GAGATACTGCATCAAATATCTCTGAGATAAGAAATTCTGGTGCACTAGACAATCCAACCA
AG                                                          
 Intron 4-535,714,57735,713,829749
gtatgcatattatggtttagctggt..........tttgttgcttgcttgttgtgagcag
5ONIVA03G43570.1.exon535,713,82835,713,64300186
GATGACAGTCTACAGACCATTGCGTCTTCAGGTGATGAACAACAAGCATGTATGCTTGGG
CGTGCTCCAAGTCCAAGGTCTCCTAGTTCACCTTGGATGCCCTTTTCAATGCTTTTTGCT
GCTATTTCCGCTAAAGTACCCCGTTCGGACATGGATCTGGTGCATAAATATTATGAAGAA
TTCAAG                                                      
 Intron 5-635,713,64235,713,55291
gttatttgtccttcctttggagatt..........ggtatggtttttgatgttaaaatag
6ONIVA03G43570.1.exon635,713,55135,713,4560096
AGGAGAAAGATAAGCAGGCCTGACCTAGTGAAGCAGCTGAGACAGATTGTTGGTGACAAG
CTTTTGGTTTCTACAGTAGTGAGACTTCAGCAGAAG                        
 Intron 6-735,713,45535,713,166290
gtacttcttttttactgtgctaact..........tacttactattgatacctgccgcag
7ONIVA03G43570.1.exon735,713,16535,713,0970069
TTGCCACCCATGGCAGCAACTGAACAAGCGCCAAGAGCACCTGGAAGGGGAGGAGGTGCT
AGTCCGTAA                                                   
3' downstream sequence
ttaaaaatgacagtttgccgacataacaagctgtggaggagtcgggttga..........