Oryza nivara (Oryza_nivara_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 3: 960,801-964,871 forward strand.
This transcript has 5 exons, is annotated with 15 domains and features and maps to 47 oligo probes.
This transcript is a product of gene ONIVA03G01450 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........cccggcgcgcccaaccttacccgcgaaggaagggagcgaccccctcgacc
| ||||||
| 1 | ONIVA03G01450.1.exon1 | 960,801 | 961,058 | - | 0 | 258 |
CCGAGCCTTTTGCGGTCCCCACCCCGCAGTGTGATGGCACGTCGTGGGGCCCACGGTGGC TGACAGGTGGGCCCGCAAGGCGGAGTTAAAGTGAGCGACCGGCCCTCCCCTCTTCTTGAC TTGCGCCACCCCACCCCACCCAAACCCCCACCGCCGGAGGAAGGAGGAGACGCCGCCGCC GCCGCAGCCATGTCGGGGGGAATCGCGCGCGGCCGCCTCGCGGAGGAGCGGAAGGCGTGG CGGAAGAACCACCCACAC |
| Intron 1-2 | 961,059 | 961,168 | 110 |
gtcggtgcctctcgatctcaacgcc..........tctgtgttctgatttggttccgtag
| |||
| 2 | ONIVA03G01450.1.exon2 | 961,169 | 961,252 | 0 | 0 | 84 |
GGTTTCGTCGCCAAGCCGGAGACGTTGGCCGACGGGACGGTTAACCTCATGATCTGGCAC TGCACAATCCCCGGCAAGCAAGGG |
| Intron 2-3 | 961,253 | 963,326 | 2,074 |
gtaagcatcgccctgaatgctacac..........cacatctctctctctcttttggcag
| |||
| 3 | ONIVA03G01450.1.exon3 | 963,327 | 963,479 | 0 | 0 | 153 |
ACTGATTGGGAAGGTGGATACTTTCCTCTCACTCTTCATTTCAGTGAGGATTACCCTAGC AAACCTCCCAAGTGCAAGTTCCCACAGGGTTTCTTCCACCCAAATGTCTATCCTTCAGGG ACAGTCTGCCTTTCAATTCTTAATGAAGACAGC |
| Intron 3-4 | 963,480 | 963,561 | 82 |
gtaagctttacaagcatttattagg..........aactgttctgattttctgctttcag
| |||
| 4 | ONIVA03G01450.1.exon4 | 963,562 | 963,675 | 0 | 0 | 114 |
GGTTGGAGACCTGCTATTACCGTCAAGCAAATTCTTGTTGGAATCCAGGACTTGCTTGAT CAGCCTAATCCTGCTGATCCTGCTCAGACCGATGGTTACCATCTTTTTATCCAG |
| Intron 4-5 | 963,676 | 963,786 | 111 |
gttagccatcagtaaaaagtgacca..........tttaatgtgctctttgggtttgcag
| |||
| 5 | ONIVA03G01450.1.exon5 | 963,787 | 964,871 | 0 | - | 1,085 |
GATCCTACGGAATACAAGAGGCGTGTTCGGCTGCAGGCCAAGCAGTATCCTCCGATTGTC TGAGAATATTGGCATAGGGACCCATGCTGCACATTCGCTTAGTTCTTGCTAGATCTAAAA TGAGTGCCTCTGCAAATATGGATTAGACCAAAATATGACCTGGAAAAAGGGTGCTTTCGG AGTTTGAGAAGTATTATCATCGTTGTGGACTAATGTCTTGTGAGATCCGTCTTGGATGTA AACGGTTTTCTTAACTGTGATTTTTCAACCGTTTGAGTGCTTGCTTTATGGGATAATGTC AAACATTGGTTTGGCAGGCAATCTCAAGAGTATTGCTATTTCTGTGCTAGTCTATATGAA AACCCAGATTAAATTCGACGAAACATATTAGTTTGCATAAAGATGTGGCAACTTCCATAT TTTCTGCATTTTTTTCTGTTTTGATCCGGATCTGTCGGCTATACAGAGGTGAAAATAATG TAAACGTCGGAGGCGTAAGTACACAGTGCACCTGCTTTGCTCAGAATTTCTCTAACCTTA ATATTGACTTGCTCTGCTGGGATTTTCTGTAACCTGAACATTCTCTGGCAGTTATGCTTT CGCCGGTATATCTCTGGCAGCAATAGCGTTAAGTTACCGATACGTACTAGCGCTGGGTTT TCAGACAATAACGATGGACTTTTACTACGGACGACGCATAATTACCTTGTACAACTACAA AGCTGGGAAGCTAATCTTTTGTTCCTAGTCAATTACGATGTGAAATTGTGATCAGACCAG TGACTTGTACAATTACCAGATGATTCAGCACAATGATATCTTTAGTTTGGTACTGCTAGT GCCTTGCACAATAGCAAGGTTTATGTTTTGTAAAGAGCTGCCGTTTACTCTTACTCTCTT CGTATCAGAATATAGCAATATAAAATTAAATGGGACGTATCTTAATACTACGAATCTGAT ACGTCTCATCCGATCCTTGGTTGCTATATTCTAGGACGGATGTAGTATTTATTATGCAGC ATATACACTTCATCCCATCCGATCTTGGTTGCTATATTACGGGACGGATGTAATATTTAT TATGC |
| 3' downstream sequence |
agcatatacactaattttgtgtatacattgactatacgtttgatttttct..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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