Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: ONIVA02G01670.1

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Description

ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 [Source:Projected from Arabidopsis thaliana (AT5G24330) TAIR;Acc:AT5G24330]

Location

Chromosome 2: 992,044-994,046 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 20 domains and features and maps to 30 oligo probes.

Gene

This transcript is a product of gene ONIVA02G01670 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	ONIVA02G01670.1	1472	357aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0G0C7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	35	79	-	cd15545	-
CDD	220	357	-	cd10539	-
PANTHER	35	357	Histone-lysine N-methyltransferase ATXR5/ATXR6	PTHR48442	IPR053114 [Display all genes with this domain]
PROSITE profiles	223	345	SET domain	PS50280	IPR001214 [Display all genes with this domain]
Pfam	234	345	SET domain	PF00856	IPR001214 [Display all genes with this domain]
Gene3D	128	357	SET domain superfamily	2.170.270.10	IPR046341 [Display all genes with this domain]
Superfamily	214	347	SET domain superfamily	SSF82199	IPR046341 [Display all genes with this domain]
Superfamily	22	81	Zinc finger, FYVE/PHD-type	SSF57903	IPR011011 [Display all genes with this domain]
PROSITE profiles	32	82	Zinc finger, PHD-finger	PS50016	IPR019787 [Display all genes with this domain]
Pfam	35	79	Zinc finger, PHD-finger	PF00628	IPR019787 [Display all genes with this domain]
SMART	34	80	Zinc finger, PHD-type	SM00249	IPR001965 [Display all genes with this domain]
PROSITE patterns	35	79	Zinc finger, PHD-type, conserved site	PS01359	IPR019786 [Display all genes with this domain]
Gene3D	23	103	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	32
Seg	3	20
Seg	22	32
Seg	76	96
Seg	119	132
Seg	163	170
Alphafold	1	357

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