Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 21 exons, is annotated with 28 domains and features and maps to 42 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI01G24940.260571539aa
 
Protein coding
A0A0E0C6D9 Ensembl Canonical
-OMERI01G24940.159791513aa
 
Protein coding
A0A0E0C6D8 -
-OMERI01G24940.358291463aa
 
Protein coding
A0A0E0C6E0 -
-OMERI01G24940.458221473aa
 
Protein coding
A0A0E0C6E1 -
-OMERI01G24940.552561272aa
 
Protein coding
A0A0E0C6E2 -
-OMERI01G24940.650611207aa
 
Protein coding
A0A0E0C6E3 -
-OMERI01G24940.750611207aa
 
Protein coding
A0A0E0C6E3 -
-OMERI01G24940.846491082aa
 
Protein coding
A0A0E0C6E5 -

Protein domains for OMERI01G24940.4.

Transmembrane helices

Transmembrane helices predicted by TMHMM.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Coiled-coils (Ncoils)

Coiled-coil regions predicted by Ncoils.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

SFLD

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Cleavage site (Signalp)

Signal peptide cleavage sites predicted by SignalP.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

NCBIFAM

NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

HAMAP

HAMAP families.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Prints

Protein fingerprints (groups of conserved motifs) from the PRINTS database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

PIRSF

Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

TIGRFAM

Protein domains and motifs from the TIGRFAM database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

PROSITE patterns

Protein domains and motifs from the PROSITE patterns database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

AFDB-ENSP mappings

Protein features that represent the mapping between Ensembl proteins (ENSP) and AlphaFoldDB protein structures (including their corresponding chains). Imported via UniProt mappings

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

MobiDB lite

Intrinsically disordered regions predicted by MobiDB lite.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Low complexity (Seg)

Low complexity peptide sequences identified by Seg.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Superfamily

Protein domains and motifs from the SUPERFAMILY database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

SMART

Protein domains and motifs from the SMART database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Pfam

Protein domains and motifs from the Pfam database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

PROSITE profiles

Protein domains and motifs from the PROSITE profiles database.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

PANTHER

PANTHER families.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Gene3D

CATH/Gene3D families.

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

CDD

URL to turn this track on

Copy the above url to force this track to be turned on

Click on the star to add/remove this track from your favourites

Click on the cross to turn the track off

Click to highlight/unhighlight this track

Statistics

Ave. residue weight: 113.105 g/mol

Charge: -15.5

Isoelectric point: 5.9179

Molecular weight: 166,603.40 g/mol

Number of residues: 1,473 aa