Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 11 exons, is annotated with 29 domains and features and maps to 29 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI12G10030.23031732aa
 
Protein coding
A0A0E0FCR0 Ensembl Canonical
-OMERI12G10030.12977714aa
 
Protein coding
A0A0E0FCQ9 -
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ctgggcttcgctctctcctcccctcgtccaaaccttcgccctcctcgccc
1OMERI12G10030.1.exon114,210,07014,210,0590012
ATGGCGTTTCAC                                                
 Intron 1-214,210,05814,209,959100
gtcgcgtgccccatcacatggtaaa..........tatttcctctctctgtgctgtgcag
2OMERI12G10030.1.exon214,209,95814,209,8690090
CCGGAGGGTGTGCGACTGCGAGCTAGGGTTTGGGGCGGCGGGGAGGGGGAAGGGGGGAGG
ATGGGCGGAGGCGGCGGCGGCGTTGGAGGG                              
 Intron 2-314,209,86814,209,648221
gttccttgcggatccatggctgctg..........ggagggaggggtggcgacggtgcag
3OMERI12G10030.1.exon314,209,64714,209,51000138
GTGGAGGTGCCGCCGGTGGAGGCGGCGGAGGAGGGGGAGGAGGAGGCGGGCAGGGCGGCG
ATGCAGCGGCAGGCGGCCGCCGCGGAGGACTACGCGCGGAGGCTGGAGGGCGGCGCCGCC
GCGGCGTACGGGTCTCAG                                          
 Intron 3-414,209,50914,207,8911,619
gtgagcccccgcgggccgatctcga..........tgggaaggtattcaatattttccag
4OMERI12G10030.2.exon414,207,89014,207,70701184
GAGGAAGGAGATGAAGAGGACTGGGGCCAAGAAGATGTGGGCAATGCTGCTGTCAAGGTT
ATGTGTCGTATATGCTTTTCGGGAGAAAATGAGGGTAGTACAAAAGCTGCCAAAATGCTT
CCATGCAAACTCTGCAACAAAAAGTATCATAGAAGTTGTTTGAAAAACTGGGGGGAACAT
AGAG                                                        
 Intron 4-514,207,70614,207,62879
gtaataaaaaatgtctcattttatt..........tttgacaagtttatgttccatctag
5OMERI12G10030.2.exon514,207,62714,207,5781050
ATCTTTTCCATTGGAGCTCATGGGTCTGCCCCTCTTGCCGCAGTTGTGAG          
 Intron 5-614,207,57714,206,875703
gttagttgtctgtatatttaaattg..........ccataactacttgtcatacgtacag
6OMERI12G10030.1.exon714,206,87414,206,7820093
GTATGTCGACGACCTGGTGATCCCAACAAGTTAATGTTCTGTAAAAGGTGTGATGGTGCT
TATCACTGCTACTGTCAGCAACCGTCGCACAAG                           
 Intron 6-714,206,78114,206,148634
gtacaccttcatccccccttttcta..........tgttctttcggttccctcctttcag
7OMERI12G10030.1.exon814,206,14714,206,0650283
GTTTATAGAGATTCTGAAGTGATACCAATGGTTTGTTGTGATGTTTGTGAAAAGTGGGTA
CATATTGAGTGTGATGGCATCAG                                     
 Intron 7-814,206,06414,205,903162
gtgtgtatgattatcgaacccaatt..........tcacatcatttcatgtattgcgcag
8OMERI12G10030.1.exon914,205,90214,205,8242079
CGAGGAAAAATACCAACAATTTCAATCGGACCAAAACCTTCAGTACACATGTGGAGCGTG
CCGTGGCGAATGCTCCCAG                                         
 Intron 8-914,205,82314,205,74579
gtaaattttacttctcccatatttt..........cacccttttttcttgcaatcttcag
9OMERI12G10030.1.exon1014,205,74414,205,02101724
ATTAGGGACACAGAAGATGCTGTTAGGGAGCTTTGGAAGAGGCGGGATGTAGTTGATCAT
GACCTTATGGCTAGTTTAAGGGCTGCTGCTGCACTGCCTTCTTTGGAAGATGTCTCACCA
TCTCATCCTAACTCAGATGATGAAAAACTTGGTGCATATGTAATGAAAAATGATGGTAGA
AACACACTAAAATTCTCTTTCAAAAGCAACAGTACTAAGCCTGCGTTAGATTCATCTGAA
CAAGAGAAGAATGCTATCAAGAGCTCAGGGTCAAATAAGAAGCATTCCAAGAAGAAAGGG
AATCAAAATAATAAAACAGTTAGCGAGCAGGATGAGATATTTTTGGAGAAAAGGAATGAA
ACTAAATCATTGGGTAGTTTGGGAGATCAAATTGCAGATGTTACTCGTGATAAGAGTTCA
TTTAAAAATGATGCCGATGCGTTTGTGCTGTCTTCAGCTCAAAGTGCAGAGAAGGCTTTG
AAATTACAATCTGCCAAAGCTGCAGCACATAATGCTGATATGATACCCAAAGTCAAGATT
AAAGGAAGTAAGGTTCCGAGTTTGCATTTCAAGGATGTAGGCGAGGAAAATGCTGCCAAG
AGTGACACAGGGAAAGGTACCAAGTTGGTTATTCATATCGGTTCACGACACAAAAGTAGG
AGTGGCTCTCCCAAGTCTGAAATGTCCAATTCTCAGAAAGAGCAAGAGCTGGTTTCAATG
CATG                                                        
 Intron 9-1014,205,02014,204,024997
gtacgcgcccctatgtagtgtagta..........gataacttgatatttgctatttcag
10OMERI12G10030.1.exon1114,204,02314,203,41412610
GAGGGAAAGTTGATGTGACAAGCCAGTTCAAAAGCTCGAGAAGTGAAATGAAAGAAAAAA
GTGTAATGAAGCTAGTTAGAGAGACTGGAGTACAACAAAATAACCTTCTAGGAGATCTAG
GTGCTTCAAAAAAGCATGCAACCGGAAAAAGGAGCAATGCTATAGTTTCTGCAATGGAAA
ATGCAAGTGAAAGTGGTACCAGAAGCAGATCGTTTGGACAAAAACAATCTGTTAATCATC
TGACTGAGAACCAGGGGAATGCTTCATTTTCTGTGAACAACTCTCCTGACAGCTTGAAGC
CATCATTGCTCAAGCTTAAATTTAAACGTCCAATTTTTGAGCAGCCAAGCACTCAGTCTT
CTCAACCAGAGGAGCCGGGCACCTGGGCTTCACCGCAAGAGGAGTTAAATGTTGCTAAAG
GCCAGAGATCAAAGAGGAAGAGACCTTCATTAGACAAGATGGATGGTTCGGAAAGTAAGG
CTCCAGCTGCCAAGAGACATGAGCAGAGCACAGGAGAAGAAGCAATGGATGCGAACTGGA
TCCTGCGCAAGTTGGGCAAGGATGCAATTGGTAAGAGGATTGAGGTCCAGCTAGCTTCTG
ATGGCAAATG                                                  
 Intron 10-1114,203,41314,203,008406
gtgagccctttatcttgaatttatg..........actaaaatattcctttttttggcag
11OMERI12G10030.1.exon1214,203,00714,202,0402-968
GCATCAGGGGGTAGTCTCGAATGTAATCAATGGCACTTTGTGCCTTCAGTTAGATAATGG
TAGGTCTGAGAACATAGAGCTGGGAAAGCGGGCAATCCGCTTGATAGCACAAAGGTCAAA
GGGTGGAAAGCGATGAACCCCTTTTGCGCCTGCCTCCCTGTTCTTGCTCTCAGTCAACTT
CCTGCCACCAGGGTAGTAAGCAGACCTCTCCAGGCTCCAGCATTTGGATCGTCAGTCTCT
GATTCATGGGAGATTGGGAGGTCTGGAGGTCTGCCGTTCTTGCTGCCTTAAGCTGACTGG
ATGAGACGTAGAAATGCAACATCATCCGTTGCGCGGTGTCTCACTAGCCTAGCATGTAAC
AGACTAGTTTTTTTTTTTTTTTTGGGTCCTGCTGCATGAAGCGCATTGGCTTCATTTTGA
CTCCTGGTAGTGTAGGAACAAACAACTGGGAAGGCTTTTTAGGGGCCACCCTGGATGTAG
AAGAAATGCCAGATGATGGTCGTGTACATGTAGCTGCTGAATGAGTTCTTTTTTTAACCA
GTTTACCCAGAATTTCCTGTGATGTGTGGTGTGGCCTCGAGCTCATCATCTGTTTGTATG
TTTGGGATACAGATGCTACGGCACATTGAGTAGTAACATTTTGCTCCTCTGTAGAAGAGG
ATCCGTGCATGTGCAGTAAGATCCTTACAGAGCAAAGGGTTCAGGGGTTCATCAGCAATC
AAATATTATTAGAGGTGCTTAAGAACCTGAAGGGTTTTCTCTACAGAAATGTCGATGCAT
GTGCTTTTAAGTGATGACACCTGAGATGTGTCGGCAAATTGATATAAAAATCTTCATTTC
TGTTCTGTCTGCAAAATGAGCCTACCTTTCTCATTTTGGAGCGACTGTGAACAAATGTCA
TCTACATGCTGGTGCTGCATGACCTTGCCTTTGTTTACAGCAGCGTGCATTTCACAATAT
TTCATGCC                                                    
3' downstream sequence
actgaatacataaacacagaaaacaaactagacacaaatcattactatgt..........