Oryza meridionalis (Oryza_meridionalis_v1.3) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 12: 473-2,868 reverse strand.
This transcript has 6 exons, is annotated with 12 domains and features and maps to 27 oligo probes.
This transcript is a product of gene OMERI12G00010 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........agagtttattttttaaatctttctgccgatatagttttttttaatattaa
| ||||||
| 1 | OMERI12G00010.1.exon1 | 2,868 | 2,469 | - | 1 | 400 |
AAAAATAAATTTAAAAATGAAAAAAATTCCCCCAACCTGTCCTCTTCTGCCGTGTGCCGT CCTTCGCCGCTGCGTTGCCAATCTCTTAATCTCTTCCCGCGTCTCCTTGCGCCTCTTCCC GCCAATCACCAACACATTTCCCCCCACCTCACCTCGCTCGATGTCCTCGTCGATTCGATT CCATCCCCAAACTTCCTTCTGCTCTTGCTAGGGTTCCTTCTTTCCTTACTTCATCTCCCT CCCATTCCGTCCCTCTTATTCAGATCACTCTCGAGTCGAGCGATGGCGCCGCTCTCGTGG CGCCACCACACGCTGCTGCAGGCGCTGCTCTCCCGCGGTCCCCTCTCGGAGCGCGACTTC CACGCCCTCTTCTCCGCCATCTCCGGCGGCAAGAACCCCG |
| Intron 1-2 | 2,468 | 2,135 | 334 |
gtaatgcttctgcctgctccgcttg..........catgttccgtatcaccgccttgcag
| |||
| 2 | OMERI12G00010.1.exon2 | 2,134 | 1,938 | 1 | 0 | 197 |
CTACTCATCGGCAGCTGTTCAATGATACACTCCTCAAGATCAACAAGGAGCTCGCATACT TGCAGTTTGAGTTAAGAGCAGGCATAAACCAGTATGATGGTACTGTGTATTATGGAGTGG TCAATAACATTGCTGATGAAGAGTCAAAGCTTGGATCAAAGTTTTCTGTGCCACAGATTG CATTCTACAAGGGATTG |
| Intron 2-3 | 1,937 | 1,862 | 76 |
gtatgcaatcactttgctttttttt..........ttatattcatgcaactgtattgcag
| |||
| 3 | OMERI12G00010.1.exon3 | 1,861 | 1,781 | 0 | 0 | 81 |
TTGGAAGCAATAGTTCATGAAGCTGGAAATGATGGGAGCATAACAAATATCGATGCTCTT AACACACGGATTGACAACCAG |
| Intron 3-4 | 1,780 | 1,461 | 320 |
gtatctcgtactaatacctaatcac..........gaaaactcttaatgaactcatacag
| |||
| 4 | OMERI12G00010.1.exon4 | 1,460 | 1,332 | 0 | 0 | 129 |
GATCGTTGGCTGTCATACACTCCCACAGGAAAGATTGGTCTTGGCACACGATCATTTCTT GATCTCCGAAGTTGGTTACGTAGTAATGATATCCCATCATGTGAGGTCTGCAATGAAGCT TGTATAAAG |
| Intron 4-5 | 1,331 | 1,220 | 112 |
gtgcagatatgtgattacgaattac..........tatttctattacttatttaaaacag
| |||
| 5 | OMERI12G00010.1.exon5 | 1,219 | 1,142 | 0 | 0 | 78 |
GCATCATCTTGTCCTAATGAGGGATGCAATGTAAGGATTCATGGGTACTGTTTGAAGAAG AAATTTTCGCAGAGAAAG |
| Intron 5-6 | 1,141 | 1,069 | 73 |
gtagttacctatttttaattccact..........tttctaaatttgtttgtgtctgtag
| |||
| 6 | OMERI12G00010.1.exon6 | 1,068 | 473 | 0 | - | 596 |
GCCTCGAGAGCTTGTGGTTGTGGTACTGAATGGCCTCGGTTGGAGGGTGAAGATGATGGT GCTGAGGATGAGGATGTTAACGAACCTGAGGAAGATCAGGTCCCATCAGCCAACCAGCAT TCGAGGACTAGACGCAGAGGTGTCAAATCTGAACTGGTGGAAGAAAATGAAAGAGCAGGC CCATCAGCGAGGATGACAAGGAGGACTTTGAGAAGCTCTAAAGCTGAAGCAGTTGAGGCT GCTCAAGAGGTGCCATCTGCAGCAGGACCTTCGCAGTCAACCAGGGCATCTAAGAGAAGA AAGAACTGATGAGATTGATCTGTGCTTGCTAGTGAGATCTCCAGGTTCCTTTTGTCATGT ACATACAGTAGCAGTAGCCAGTAGGTAATCCTTTTGAAGTGGCAGGCAAAGTTGCAACTT CTAGTTGGAGAGGAATATATATAGCTTTCGGATGCTCTTGTTACTAACTCTTAGAACGTA TCAGAAGCCTAATGCTTTCATTTGGCAAAGCATGCCTGCTTGTGACAGCCCAGTTAACTG TTTGAATGGCTCTCTTGCTTGTTGATGCTAGTTTCATGCATGCTGTTTTTATCCTC |
| 3' downstream sequence |
tatgttgcttgtttctttgtgtctcttcctaaaagggacaatttgaagct..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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