Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 19 exons, is annotated with 39 domains and features and maps to 62 oligo probes.

Gene
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  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI11G04880.160032000aa
 
Protein coding
A0A0E0F3A8 Ensembl Canonical
Markup
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........aacgagcgggaatccggatagttcaaatttccaaaaatggaaactgagcc
1OMERI11G04880.1.exon14,593,8414,593,65900183
ATGGGGGCTGGCCCACTTGTCAGCGTCACCGCATTAACAACGCACCAACATCTCTTCATT
CCCTTCATTCCCCTCCTCGACCTGTCGTCTTCTCGCCTCTTCGTCTCCTCGTCCGCCCAA
ATCCGAGCTCCCTCCGCTGGCGGCGGCGCCGGCGATTTCTCACGCGCGCTCCTGCTTCAC
GAG                                                         
 Intron 1-24,593,6584,593,553106
gtgggtgagctgctaatggttgacc..........cggttcttggctcgttgctccgcag
2OMERI11G04880.1.exon24,593,5524,592,63200921
GGTGGCGCCGACGCCCGCCGCCTGTTCGACGGAATGTCTGGGCGGAAGGAGGCCAAGGGA
TCGGTCGGCGGAGACCGCATAGGGGCCCTCCCGGACGAGGTGCTCCACCGCGTGCTCTCC
TTCCTACCGGCGCAGGATGCTGTCCGGACGTGCGTTCTAGCCCGGCGCTGGCGCCACCTC
TGGAAGTCCGCCACGGGGCTGCGCGTTGGCGAGGACGAGAGCAATCTGGGGAGTGTGAAG
GAGCAACAGGAGTTTCTTGACCATCTGCTGGTACTCCGTGATAGTGAGCCTCTTGAAACC
TGCGTGCTAAGGTTCAATGGGTACGACGACGATGACATTGAGGATATATTCCGGCTGAAC
GTCTATTTCAGGTATGCTCTGCACTGCAAGGTTCGGTTCCTTCGGCTCGACGTCTGGCAG
GAAGAAGAATTTTGTGACCATGTTCCAATAGATGAGCAGCCTATTGTCTCCCAGCACTTG
ACAAAGCTACAACTTTATGGTATAGTGCTAAACGATGGCTTGCTTGACTTCTCAAGCTGC
CCAGCATTGGAACATCTAGTGTTTGACTCATGTGTATTTGAGTGTGCCAAGATCTCATCT
AACTCAGTAAAACATCTGAGCATCACATTTTCCAATTTCCCCTCTGGGACCTTGCGGGTT
CGTATTGATACCCCGAGTCTTGTTTCTCTGCGGCTGGATCGCATCTATGACCGTAAGCCA
GTGCTTGAGAGGATGCCATCATTAGTTGATGCATTTGTCAGTGTCCCAAGCTCTAGTGAA
GACTTCTGTGGTGAATCTGACTCTGGGGATTGTGGTCGTGACGACTGTGAATCTTGTTAT
GGTTTCACGAACAACAATTGTGTGCTTTTGGAAGGTTTGTCGGAAGCTAAGACGTTGGTG
CTGATAAACGAAGATGAATCG                                       
 Intron 2-34,592,6314,592,512120
gtatgcttgcacttccatctttaag..........atgttcttgtttgcatgctgctcag
3OMERI11G04880.1.exon34,592,5114,592,35000162
TTTATTTTCAAAAGGGATTTGAAATGGTGCCCAACATTTAGCAAGTTAAAGACTTTGATA
CTCAATGGGTACTGGTGTGTGCCTGATGATTCTCACATGCTAGCTCGCATTCTTGAACAC
TCGCCGGTCCTAGAAAAACTCGTTTTCCAGCTTGGTTACCAG                  
 Intron 3-44,592,3494,592,247103
gtagtatattttatttaaattgaca..........gtgaaattttttttatttgctacag
4OMERI11G04880.1.exon44,592,2464,592,09301154
GCATATAGACGTACTAATAAAATTAAAGGAATTCTCAATCCAATGGAGAGATCAGCTGGA
ATATCAGAACACCTCCAGATAGTTGAAGTTCAATGCAATGCGATTGATGGTCAAGTTCTT
AAAGTTTTGAAGTACCTGTCAACATTTAAAATAT                          
 Intron 4-54,592,0924,591,822271
gtaagatcttcataccttttctttt..........gcatggcacttttcatattgtgcag
5OMERI11G04880.1.exon54,591,8214,591,7921130
ATTTCAGTTTGGAGGAAGCGATGATTGAGA                              
 Intron 5-64,591,7914,587,6794,113
gttagatgatcatgatgatgacgaa..........ttttgaccaggttccgatcgatgag
6OMERI11G04880.1.exon64,587,6784,587,35910320
CTGCCTCTGATCTCCTGGCAGCACTAGACAAGGCTACAACTTCACGGTACAAAGCCAAAC
GACAGCGACAGCTTCCTCGACTTCTCGAGCTGTCCAGCATTGGAGCATCTGGTGTTTGGC
TATTGTATACTCAAGTGTGCCAAGATCTCATCTACAGCTCCGTAAAACTCTTGAGCATAA
CTGATTCCAATTTCAGTGAGACCTTGCGGGTACATACTGATATCCCGAATCTTGTTTCTC
TGTGGTTGGATGACTTTTGTGACCGGACAACGGTGCTTGAGAGGATGCCAGCATTAGCAT
TAGTTGACGCATTTGTCAGG                                        
 Intron 6-74,587,3584,584,1953,164
gttctcgattattgtcacggcagcg..........cgagagagtgacaactatactcaag
7OMERI11G04880.1.exon74,584,1944,584,1270268
ACTTATGTAGTGAGCCTGACTTGGATTGTGGTCGTGAGGGTTGTGAATCTTGTTACGGTG
TCGAGGAC                                                    
 Intron 7-84,584,1264,582,5351,592
gtgagttgcgtacttctaaggttta..........gtccgcgcgatccgatcgcctcgag
8OMERI11G04880.1.exon84,582,5344,582,42620109
CCCAGCGAGCTTCGCCGCCGTTGGTACCGGGCCGTGCTGCGTCTCCCTGCTGCTGCTGCT
GCTGCAACTCCGGCCGGTGGAGGCGCTGCCGGCGGCGAGGCGAGACGAG           
 Intron 8-94,582,4254,582,312114
gtgaggtgaggtgctctgtggctgt..........cttctgatcggtttctgtttcgcag
9OMERI11G04880.1.exon94,582,3114,581,37900933
AGCGCTAACGCCCGCGGCCTGTTCGACGAAATGCCTACGGGGAAGGAGGGGATGGAAGAG
CCTTTGCCGACCGACGCCGACCACATTGGGGCTCTCCCGGACACAGTGCTCCACCACGTT
CTCTCCTTCCTGCCGACGCAGGATGCCGTGAGGACGTGCGTGCTCGCCAAGCGGTGGCTC
GACCTCTGGAAGTCTGTCACGGCATTGCGCATTGGTGACCGTGACAAGAGGAAGCTGTGG
ACCGTGAAGGGTCTCCAGGGGTTCGTGGACCATTTTCTGCTGCTCCGTGAAAGTGTGCCT
CTCCACACATGTGTGCTCAGGTTCATCGTGTTCAGCGAAGACCTCAACGAGACATCCCGG
CTTAACCTCTGGATTAAGCATGCTCTGCTGCGTATGGTTCAGTTTCTCCAGGTCTCCATC
CGGCAGAATACAGCCTTCTATCACCAGATTAATCTAGGCATCCTGCCTTTTGTCTCGCGG
CACTTGTCGACGCTTGAGCTTCACGGTGTACGGATGGTGGGCAGTTTCCTTGATTTCTCC
AGATGTCTGGCTTTGCAACATCTAGAATTTGACCGCTGTGAGTTGCCATGTGACAAGATC
TTATCAGAGTCCCTAAAACTTCTGCGCATCACTCGCTGCAAATTCAGTCAAACATCACGG
GTTCGTATTTGTGTCCCAAGTCTTGTTTCACTGCGGCTTGATGATTTTTATCGCCGTACT
CCAGTGCTTGAGAGGATGCCATCATTAGTTGAGGCATTTGTCAGAGTCGTCCACAGGACT
TATGATTGTTGTGGGTATGATTATATTAACTCCGGTGATTGTGGTAATGAGCACTGTAAG
TCATGTCATGGCATCAAGGACGGCAACAATTGTGTGCTTCTGGATGGTTTATCAGAAGCT
AAGACTTTGGCATTGATTGATAGAACCATATCG                           
 Intron 9-104,581,3784,581,193186
gtatgcttgcatgttaattcaatta..........tatcctttctttttctattgtccag
10OMERI11G04880.1.exon104,581,1924,581,03100162
TTTATTTTCAATAGGGATTTAAAATGGTGCCCTACATTTAGCAAGTTAAAGACTTTATTA
CTCAATGAATACTGGTGTGTGCCTGATGAGTTTAGTGCACTAGCCTGCATTCTTGAACAT
GCACCAGTTCTAGAGAATCTCATTCTTCAGCTCTATTCCGAG                  
 Intron 10-114,581,0304,580,94190
gtacaccttctctaattggacagct..........agaaaaaaatgtctatttctggcag
11OMERI11G04880.1.exon114,580,9404,580,78701154
GGTCCTAAGCATACAATGAAAATCAAAGGAAACTGTCATCCAATGGATAGATCAGCTGCA
ATATCAGGACACCTTGAGACAGTTGAAATCAGATGTGAAGTGGTTGATAAAAGAGTACTC
AAAGTTTTGAAGTACCTGTCTACATTTAACATAC                          
 Intron 11-124,580,7864,579,6881,099
gtaaataacatacctgtctacattt..........cttttcatattcatgcagttttcag
12OMERI11G04880.1.exon124,579,6874,579,50811180
TTTTGAGCAAGTCAAGATTTCTGAAGAAGATGACAGTGATGACAATGACCAAGAGGATGA
GGAAGATGATGATGACGACTTTTATGGAGAGGAGGAGGAAGAGGAAGAAGAGGATGATGA
AGATGAAGATGAAGATGAAGATGAAGATGATTGATGCACCACCTTTTGATTATTCAGAAG
 Intron 12-134,579,5074,575,6573,851
gttgacaccacaaggatgataacat..........acctgtttcttgcatgcgctcgcag
13OMERI11G04880.1.exon134,575,6564,574,69210965
TGCAGCGCGCACGCCGCCTGTTCTACGGAATGCCTCCGGCGAAGAGGGGCCGGAGGATGG
TGGACCAGGACGGCGGCGGAGGCGGAGGCGAAGACCGCGTCGGCGCGCTCCCGGACGAGG
TGCTCCACCTCATGCTGTCGTTCCTGCCGGCGCGGGACGCCGTGCAGACGTGCGTGCTCG
CCCACCGCTGGCGCGACCTCTGGAAGTCCGCCACGGGGCTGAGGATTGGGAGCGACGAGG
AAGACACGGCGCGCGTGCGGGAGATCAGGGAGTTCGTCGACCACCTCCTGCTCCTCCGCG
GGTGCGCGCCTCTCGACATGTGCGAGCTCAAGTTCTGGTTTGACAGCGACGAGGACGACG
AGGAGGAGGACGAGGAGAGCAAGAACGATGCCCGCCGGGTGAATCTCTGGATCCGGAATG
CTGTTGCCTCCAAGGTTCGTAATCTCGTGCTCGACAACTTCTGCAGTGGAAGCTTTGAGC
TGGATGATTTGCCTCTTGTCTCTCGCCACCTGACGAGGCTAGAGCTCTTTAACCTCGAGC
TAACCAACAGATTCTGCAACTTCTCGAGCTGCCCGGCGCTGGAACATGTAAAGATTGCCA
ACTCCACCGTATCATGTCCCAGGATTATCTCATCATCCACCGGGTCACTACTACGTTTGA
TCATCACTCGATGCTCTTTCGTTGTCGGTACTAGCTTCCGCACTAAAATCTGTGTCCCCT
GTCTTGTTTCACTGCAGCTGGACAGCAATTCGAAGACTCCTCTACTTGAGAGTATGCCAT
CGTTAGCGGAGGCAACTGTCAGAGTCACCGCTGGATGTTCTGACGTTTGTGGAAATGCTG
ATTCTGGGTATTGTGGTTTTGAGGATTGTAAGTACTGTTATCCCATCGATGACAACAGAA
ACTGTGTGCTTCTGAATGGTTTATCAGAAGCTAAGAATTTGGCATTGACAGCTGAATGCA
AAACG                                                       
 Intron 13-144,574,6914,574,473219
gtatgcttaaattcttgcttttaac..........atcttttgtcctgtgttttgtttag
14OMERI11G04880.1.exon144,574,4724,574,31100162
TTTATTTTCAAAAGGGACTTGCAATGGTGCCCTACATTTAGCAAGCTGAAAACTTTATTG
CTAAATGACCACTGGTGTGTGGCCCCTAACTTCCATGCATTAAGCTGCATTCTCAAACAC
TCACCGGTTCTCGAGAAGCTTACTCTTCATCTTTTTTCCAAG                  
 Intron 14-154,574,3104,574,23279
gtatatatattctctcaacagatta..........agtataatgtccttgttttcttcag
15OMERI11G04880.1.exon154,574,2314,574,07801154
GGACCTGAACATAAAGTAGAGTTGAATGGGAGTTTTGGTTTGATGGACAGACCAACTGGA
ATATCAGAGCGCCTTAACATAGTGGAAGTCAAATGCAAAGTGGTCGATGAGAATGTTTCC
AAAGTTCTGAAGTTCCTGTGTGCATGTAACATAC                          
 Intron 15-164,574,0774,569,6824,396
gtaagctaactaactgttctaatgc..........catctctctcccgcgtcatctgcag
16OMERI11G04880.1.exon164,569,6814,568,68710995
CTGAACCGTATCTCTCCTGCGCCAGTGAGCGCCCGCGCGCCCACAGCCTGTTCGACGGAA
TGCCTCCAGCGAAGAGGTCCAAGAAGGACCAGGCCGGCGGCGAAGACCGCATCGGCGCGC
TCCCGGACGAGATCCTCCACCACATGCTGTCGTTCCTGCCGGCGCGGGACGCCGTGCAGA
CGTGCGTGCTCGCCCGCCGCTGGCGCCACCTCTGGAGGTCGGCCACAGGCCTGAGGATTG
GGGGCGAGAGGGAGGTCCGCCACAGGCCCGAGGATTGGGTTTGGTGGCGAGTGGAAGAGA
AGCCGCGTGTGCGGGACATTAGGGAGTTCGTGGGCCACCTCCTCCTCCTCCGCGGATGCG
AGCCTCTCGACATGTGCGAGCTCAGGTTCTGGTCTGACTACTACGACGATGACGAGGAGA
TCCGCCGGGTAAATCTCTGGATCCAGCATGCTGTTGCCTCGCATGTCCGGCATCTCGTGG
TCAGTAACATTGCCGGTGGAGTCTTTGAATTGGACGACCTGCCTCTTGTCTCCCGCCACC
TGACGAGGCTAGAGCTCTTTAAACTCGACCTAACAGACAGATTCTGTAACTTCTCAAGCT
GCTCGGCGCTGAAACATCTGAATATTTCCGACTCCATGATATCATGCCCCATGATTAGCT
CATCTGCCGGGTCACTGCAACATTTGAGCATCAGTCACTGCTCTTTTGGGGCCGTTAGGA
ATTTTCGCACTCGGATTTGTGTCCCAAGTCTTGTTTCACTGCAGCTGGATGACTATTGGT
GCATGACTCCTCTGCTTGAGATCATGCCATCATTGGTGGAGGCAACCATCACGGTCAACT
CTGGATGTTCCGACTTTTGTAGAAATGCTGGCTCTGGTTATTGTGGTTTTGAGGATTGTA
ACTACTGTTACCCTATAAATGATGACAGAAGCTGTGTTCTTCTGAAAGGTTTATCAGAAG
CAAAGAATTTGGCATTGGTAGCTCATTGCAGAACG                         
 Intron 16-174,568,6864,568,472215
gtatgattacacacttgttttgtcc..........tttgcatgtcctgttttctgtctag
17OMERI11G04880.1.exon174,568,4714,568,31000162
TTTATTTTCAACAGGGACTTGAAATGGTGCCCTACATTTAGCAAGCTGAAGACTTTATTG
CTAAATGACCACTGGTGTGTGACTCCTGAGTTCCACGCATTAAGCTGCATTCTCAAACAC
TCGCCAGTTCTTGAGAAGCTCACTCTTCATCTTTTCTCCTGG                  
 Intron 17-184,568,3094,568,23476
gtatgtattctcttaacagattaaa..........ggtataatgcccttgttttcttcag
18OMERI11G04880.1.exon184,568,2334,568,08100153
GGACCTGAACATAAAGTGGAAATGAATGGGAGTTTTGGTATGATGGACAGACCAGCTGAA
ATACCGGAGCACCTTAATATAGTGGAAGTCAAATGCGAAGAGGTCAATGAGAATGTCTCC
AAAGTTCTGAAATTCTGTGTGCATTTAACTTAC                           
 Intron 18-194,568,0804,566,8691,212
gtaagctaactaagaactgctctta..........atgtattcattcattatgacagcag
19OMERI11G04880.1.exon194,566,8684,566,8330036
GAAATGCTGGTAATTTTCTTTGAATTCATCGTCTAA                        
3' downstream sequence
tgttaagataatgcatcattttttagctctttgcgcattatagtacacta..........