Oryza meridionalis (Oryza_meridionalis_v1.3) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 10: 16,816,192-16,819,065 reverse strand.
This transcript has 7 exons, is annotated with 10 domains and features and maps to 83 oligo probes.
This transcript is a product of gene OMERI10G14250 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........ggcgtcattgtcgccttctcctacgcgaattgagaggacagcttagctcg
| ||||||
| 1 | OMERI10G14250.1.exon1 | 16,819,065 | 16,818,891 | 0 | 1 | 175 |
ATGGATCCGGCGACGCGGGCGGCGGCGGCGGCGGCGGTGGTGGAGAAGGTGTTCGTGGCG CTGCCGGCTGAGAAGGGGAAGACGACGCTGTCGTGGGCGCTCGGACATTTCCGCGGCAGC GGAGCCAAGCTCGTCGTCACGCATGTGCATGTGCCGCCGCAGACGATCCCCGTCA |
| Intron 1-2 | 16,818,890 | 16,818,608 | 283 |
gtacgtgccctgccccccccccccc..........gattatcttcttcttttaatctcag
| |||
| 2 | OMERI10G14250.2.exon2 | 16,818,607 | 16,818,567 | 1 | 0 | 41 |
TGGGAGTTCAGTTTCATGTTAGTAACGTGAGTCCGCAGCAA
|
| Intron 2-3 | 16,818,566 | 16,818,059 | 508 |
gtaagcttgttcagaagaactgagc..........atttacaatggttcgtatatttcag
| |||
| 3 | OMERI10G14250.1.exon3 | 16,818,058 | 16,817,937 | 0 | 2 | 122 |
GTCAAATGTGAGAAACTAGTCATTGAGAAAGAAGATGTTGTAGCTGGTCTTCTTGAACTT ATTGCCTCTCATGGCATCACCAAGTTAGTAATTGCAGCTGCTGCAGACAAGCACTACTCA AG |
| Intron 3-4 | 16,817,936 | 16,817,667 | 270 |
gtacatctagcattacaaaattgtt..........tgactattgaacatcgaaccctcag
| |||
| 4 | OMERI10G14250.3.exon4 | 16,817,666 | 16,817,519 | 2 | 0 | 148 |
AATCTCTGATTCAGTTCTCCATGACAGGGACAAGAAAGTAGAAACCACACAATCAGTTAC ACCTCTCAGCCAACTTTTCAAGATTGATACTCCTCCCAGCCCTGATATTGGTCAGACCAT TCTGCAACCGTCAGCTGAACAGGAACAG |
| Intron 4-5 | 16,817,518 | 16,817,428 | 91 |
gtttcatcagattatgcagtagata..........atgatagcggtgcttttgttttcag
| |||
| 5 | OMERI10G14250.1.exon6 | 16,817,427 | 16,817,287 | 0 | 0 | 141 |
AATGACAATGAGATGGAATTGGGGTTTTCTGATGAGCTCAATGATGCACGCGTAGCAGCT GAGAACTTGATGGAGAGAGCTTTAAGCGAATCTTTGAGGCGCCAGAGAGCAGATGAACAA GTGGTTTCATCTCTTCAGAAA |
| Intron 5-6 | 16,817,286 | 16,817,183 | 104 |
gtaattatgctacccatttgactga..........ttgataataactctgaacctcccag
| |||
| 6 | OMERI10G14250.1.exon7 | 16,817,182 | 16,816,778 | 0 | 0 | 405 |
GTCAAACAATTCGAGGAGTTGTACTTGGAGGAGGTGAAAAGGAGGAAAGAATTGGAAGGA GCTCTTGTCAAAGCAAACTTAGAACTTACACGGTTAAAACAAGAAATGGACATACCTAGG AATCACCAGAGCACAATCTTGGGGGATCGACAAGAAGTGATTACCGATAAATTTATCTTG AGACAACAAACTGTCGACATGAAGAGTGATTTCGGAGCCACAGGACAACTAATCAAGCCA CAGCAGGAGTATCTTCAGTTACATCCTGACCATGACAATGGTGTCAGACAACCGGAAACG TTGCTACACCGAAGGAGCCTGACTGCATTTTCTCCAGCATCAACTGTACCATCACAGTTT GATAAAGACTCCATTCCTTCCCACTTCATCTGCCCGATTTCTCAG |
| Intron 6-7 | 16,816,777 | 16,816,642 | 136 |
gttttcatatcctcagacaaacaaa..........tgttttgatttgcatgtaattgcag
| |||
| 7 | OMERI10G14250.1.exon8 | 16,816,641 | 16,816,192 | 0 | - | 450 |
GAGATCATGAGGGAACCCTGCATTGCAGCAGACGGGTTCACCTATGAAGCTGAAGCGATC ATCAATTGGTTTGATGAAGGGCACGAAGTGTCTCCCATGACCAAGCAGCCTCTTGTGCAT CGCGACCTGATCCCAAACTTTGCTCTTCGTTCTGTAATCCAAGATTATACAAGGAGAAAA CAGTATTCATTTTCCTGATGCTATTTGCTCCTTTTCCCCTTCTCTGACTCACTCAATTTT TTTTGTGAATATTGTTGTGGGTGACATCTCACTGACAAATGGATTCAGCTGAAAGCAACA GCATTTTTAAACAGTTGTCATGTGTTGTTTGTTTTGAGCTGTCAGCTAGTGCAGCAACAG AGATGCTGTGTTGATGACCTTTTTTTGCCTCTTTGATTTATAACCAATCAGGTCAGACAA GATTATGTGCTGGCATAAATCATAATATCC |
| 3' downstream sequence |
ctgaatgtcacattttgcacgatgaagcctaaacaatcacatgaaaacat..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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