Oryza meridionalis (Oryza_meridionalis_v1.3) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 8: 19,266,458-19,272,490 reverse strand.
This transcript has 9 exons and is annotated with 11 domains and features.
This transcript is a product of gene OMERI08G16070 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........tccggttaagttccacgaacttccggtagaatatcagagattcgatattg
| ||||||
| 1 | OMERI08G16070.1.exon1 | 19,272,490 | 19,271,896 | - | 1 | 595 |
GGTTGATCTTTTTATATTGGAGATTGTAAATTTGTACGAAATTTCTGAGGAAGCGAGCCG AATACAGTGTGCCGGCACAAGGATTTCCTCTAAGCCCATGGGGGCCCAAGTAAGCCCATT TGGGCCCAACACGAGACGAACACGTACAACAAAGCCCGAGAAGGAAACCTAAGCACACCA AAGGGCATCGCACCGCACAACCCAAAAACCCTTCTCTCTCCTCACCTCGCCGCCGGCGCT AGGTTCGCGACTCCGCCGATGTCGGCGCCATCCGACCCCGCCGTGGCCACCCACCCGCAG GCGGGCGCCGCCGCCGCCGCCGCCGCGGCGTCCTCCAGCAGCGGCCTCACCTTCAAGCTC CACCCCCTCGTCATCGTGAACGTCTCCGACCACCACACCCGCGTCAAGGCCCAGGCCGCG TGCTCCGGCGACGGGGCCTCGTCGGCGGCGGCGGGGCAGCCGCCGAGGGTGTTCGGGTGC GTGATCGGGGTGCAGCGCGGGCGGACGGTGGAGATCTTCAACAGCTTCGAGCTCGTCCTC GACCCTGTCTCCGGGACCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCT |
| Intron 1-2 | 19,271,895 | 19,271,795 | 101 |
gtgagtgaaattccggcgaatcgac..........cgtgattgcggttgtgaccgtgcag
| |||
| 2 | OMERI08G16070.1.exon2 | 19,271,794 | 19,271,706 | 1 | 0 | 89 |
ATAAGAAGGTTTTCCCCGACTTCTATGTGCTGGGTTGGTACTCCACTGGCAGCGATGTGC AGGACACTGATATGCAAATCCACAAGGCT |
| Intron 2-3 | 19,271,705 | 19,271,030 | 676 |
gtaagttcttgttcaagtgcccaat..........acttacttctttttttattatccag
| |||
| 3 | OMERI08G16070.1.exon3 | 19,271,029 | 19,270,936 | 0 | 1 | 94 |
CTGATGGACATTAACGAAAGCCCCGTTTATCTTCTCTTGAATCCTGCAATCAACCTCTCC CAGAAGGATCTCCCTGTAACTATTTATGAGAGTG |
| Intron 3-4 | 19,270,935 | 19,270,546 | 390 |
gtaggtgaatctgacttcagtttgg..........tgacatgatcttctgtaatttcaag
| |||
| 4 | OMERI08G16070.1.exon4 | 19,270,545 | 19,270,484 | 1 | 0 | 62 |
AGTTGCATGTTATCGATGGGAGTCCGCAGCTCATCTTTGTCAGAGCTAATTATACAATTG AG |
| Intron 4-5 | 19,270,483 | 19,270,406 | 78 |
gttagttttttttctttgtgttgct..........taacattagtacgtttgatttaaag
| |||
| 5 | OMERI08G16070.1.exon5 | 19,270,405 | 19,270,327 | 0 | 1 | 79 |
ACTGTAGAGGCAGAGAGAATATCTGTTGATCATGTTGCCCATCTCAAACCATCTGATGGT GGCTCTGCGGCAACTCAAT |
| Intron 5-6 | 19,270,326 | 19,270,238 | 89 |
gtgagggttcttcttatcatcagtt..........gatactgacagatatatttgagcag
| |||
| 6 | OMERI08G16070.1.exon6 | 19,270,237 | 19,270,145 | 1 | 1 | 93 |
TGGCTGCTCATCTGACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAGGGTCCGTG TTATCCATCAATATCTTGTTTCCATGCAGAAAG |
| Intron 6-7 | 19,270,144 | 19,270,010 | 135 |
gtattttttgttgctgttgagccct..........gtaaatccctttaccctcactgcag
| |||
| 7 | OMERI08G16070.1.exon7 | 19,270,009 | 19,269,909 | 1 | 0 | 101 |
GTGATATGCCACTGGACAATTCGCTGCTTAGGCAAGTCTCGAGCCTAGTAAGAAGGCTAC CAGCAATGGAGTCAGAAAAATTCCAAGATGACTTCTTAATG |
| Intron 7-8 | 19,269,908 | 19,269,825 | 84 |
gtctgctaacttgataatattctct..........gtgatgatcttctctgaattttcag
| |||
| 8 | OMERI08G16070.1.exon8 | 19,269,824 | 19,269,769 | 0 | 2 | 56 |
GAATACAATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG
|
| Intron 8-9 | 19,269,768 | 19,269,479 | 290 |
gtatgcccccacttatcatacaaac..........gtgttaatactcttgtaacttgcag
| |||
| 9 | OMERI08G16070.1.exon9 | 19,269,478 | 19,266,458 | 2 | - | 3,021 |
CACAATGAATGAGCTGGTTGAGAAGTTTAATGCGACATACGAAAGGTCGACTGCCAGGAG AGGAGGCCGAGGTGCTTTCATGTAGATTTCCTCCCTTCTGCATCTGCAGCTGGTTCTCTG CTGAGATTTTGGAAATAGTTACCCATATGGCCAGAAAGTTTTTGCGTATAATCTGTTAGG AACTATATCTGGCAGCCATCAAGTTTCTTCCAAACTCATGCTCCCTCGTTCAGGGTTGAC ACGGCAAACATGTTGATATTCTTGATTCTGTGCCTAGATCGTTGTTTATTCCTCATTCGC CAAGATTGACATGTAAAGTTTATCCCCATCACCCCCATGGTAGTTACACTATTTGACTCC CTAAATGGATATGGATGCAGGTTTCCTGAGTTATGCTTGTAAAATTCTTTAGGTCAACTG TATGTATGGCTGTTGGTGTCAACGCAGCGTAAGGTGATGTGATGCGTCATGTATGGCTGT TGGTGTCAACGTAGCTTGAGCTGATTTGATGCGTGATTGACTGATGGTCATGGCAAAATT AAAATTACCGTGGCGAAATGAGCTTTCATGTTTCAAGCTAATGTAGATCATGAAGCTGAG CCCGAATAAATTTCCAAGCTACTAGAAAACAGAGACGATGAAAACCAATAAATTTCCAAT ACGAATTCATTACTTTATTACAGGACACAAGCAGCCGACCAATCCTAAGAACAGCTCCTT GTTTACAATCTACAAGTGCAAAGCAAACCAACAAATCCTAAGAGCTGTTCCTTGTTTACA ATCTACAAGTGCAGAGCAAACCAACAAATCCTAAGAACAGCCCCTTCTAACCTACAAACG CAAGAGATGTTCCACAGTTTTGTTACAGAACGGATGAAGGAATTACAGAATCAAACCCGA ATGACAATCATCACAACATTCGGTTTATTGCCTTCGAATGTCAGGATGGCACTGATTCCT GCAGCCCATCTCGCAGGCGTTGCCACAGACTGTTAATCCAGGCTTTCGCTCCAGGAGCTC CGCGACAGTTGGACTGCAGCCACGGCGTTCCAACATGTTCTTCCCAACACCAAGCCACCT CAGGCCCCGAAAAAATGGCGGCTCAAAAAGCCCCAGGAAATTACGAGACAGCCTACAACA GTAGGAGAGATCCAGCATTCTTAAGGAACTTTTACCGGAATTGTGACGCATAGAACCTAG AGTTTCAAGAGAAGAATCATTGATGAGGAGGCAGTTCCGGAGGCACAGGCTGCTGATCTG GTCGCAGTTCTTGGCGATCAACGTGACAGCTCTGCCTGATATTCTTGGTACATTCCCGAT ATCCAGTGAGATTAGAGTTTTGTTGACGGTGCCACTCCCGCACAACAAAGAAGCTATGCC ATTGTTGCTAATCCTTTTGCAACCTCTCAAACATAACGAAGACATTGGGCACCGCCCGTT ACCTAGTGCAGATAATCCTGCATCAGTAATGTCAGCTCCAGCAAGATCCAATAGTGCTAG CTTCGAAAGCTGTGAAATAGAAGCCAACCCAGAGTCTGCGATGCTCCTGCAACCTGATAG GTCTAGAACTTCCAACTTGGTGCAGGATGAGAGTGAGATGGCTGTTTCACTGGTTAATAG ACTACAGCACAGCAACCTCACTTCCGTAATCTTTGGAGCTGCCTCATCAAGATCAAGGCA TGTCAAATCTGACAAGTATCCAGTACTGACCTCAAATTTCTTCAGGTCCTTGCAAGACTG AAGAAGAGCTGCATACCCAGCATCCCTCACTTTAGAGAACCCAGCAAGTCTAATGGTTTT GAGTTGCTTGCAACCATCAGCAAGCATCATTATTCCAAAATCGGTTACCCTTCTGAAGGT GGACGAACAATTCTGCTTACCACGTGTCAGAGATAAATGTGCCAGGTTGTGGCATAACCC AAGTGCTTGGAGCCCAACGTTTGTCAGGTCATTGTGCAAATCTGGTTCTTTCATCGGGTT ATCTTCTAGGCACAACTCAACTAAGTTATGGAGACTCCCAGTGATGAACGCAACAAGTTC ATCTGTTATTATGTCAAGAACTAAAGAGAGTGATTCTAGAGTGTTGCTGATAGATGTCTT CAGACTTGTGCTTATAGGAAATAGCCTCTTTGCCTGCCAATTCGACACAGGTTGTAGCAA TAGTACCTTGATGGTACTAGGAATGGGTACCAATGACTCAAAATCAACGGAGCCTGGACC TAGCAGAGGAAAGAACTTGAGTGAAAGATTCTGCATGGAGAGAAAAGAACGTCAGATTAG ATTATCCGACCAGATTAACTTTTCAAAGAGTTCCATGTCATTGTTAAAATAATATGGCTA ATATTATGTATACTTTAGTACTCACACATTCTCAGCCTAAAATATTATTTAGAAAATACA ATATTGCTATGAACTAACCATATATCTACGCGAAGAACAGTATTGGGGTTCATCTGCAGC AAAGATTCCTCACCTCCAGGTAACCACATCCTTTGACGATATGTGCTATGGACTTTCGGC AGATCCCGAAATGTTCATCATCATCTGAAGGTGCCATCTCCAGCACAAATGATCTGGATA TAAAGAGAAGAATTCAACATGCTTCGATCGACATTATTTGGGCCAATATACAACCAATAC CCATGGAATGTACAAATCAATTTCCCCTAATGTTCGTCACACAAAAACAAGGATAAATAT CATGCAACAAATTCATCGATTCAATTCCACTGATATAATACAATTTCGTGGGCAATCGTG CACACAGAAACAAAGCCAACGCTGAAGGAAGAAACCACACCTTAAATTTTTGCATCTCTC ACCAACTGCCACAAAGAGGTACGAGGAGAAGGACGAGCACTTGTGCAGCGAGAGCTCGCG GAGGCTTCCCTTCGCGATGGCGCCCACCGCGGAGTCATCGAGGAGGCTGCAGTTGACGGC GAGGCAGCGGAGCGCGCCATTGCCCGCGAGAATCCTATTCAGGATGGCATTCGTCGGCGG GAACATCTGCCAACACCAACA |
| 3' downstream sequence |
ccaagcgcgtttaggggggggggggggggnnnnnnnnnnnnnnnnnnnnn..........
|
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Ensembl Plants release 62 - September 2025 © EMBL-EBI EMBL-EBI
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