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Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 2 exons, is annotated with 17 domains and features and maps to 47 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI08G04350.13079731aa
 
Protein coding
A0A0E0EIG8 Ensembl Canonical
Markup
  • loaded
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ctcaccccggttcaaattctagatttgatacggatgctcgcattgatagc
1OMERI08G04350.1.exon14,167,7194,167,102-2618
TATTTATTTTTTCAGTGGTAGATGACGTAATCGTCGATAACGAGCCGCCCGTGGTGACTT
TGTCAATCTCAAAAAATTACTGACCCAGTTTTTTGGAGGTGCTCGTAATAGTAGGGTCGT
GTTATGGGTATCTACGTTTATACCGTGGTTATTAAAAAAAACAAATTCGAACCGGAGTCC
TCAAAATAATCAGATGTCCCCCCAAACCAAACCGGACTCCATCTCCATCCCCAACTTCCC
AAGCTGGAATCCATCTCAAGCTCTCCCTCATCTTCTCATCTTCGCTTAAAAATACAAACA
AAACGAATTTCACAAAAATCCTCGAGAAACATCTCCTCCTCTCTCTCTCTCTTCCTCCTC
CCCCACATCTCCCGCGAGATACGAAACCCTAGCGCTCGCGGCCTGAATCCGCAGCAGCAG
GCAGGGGCCTCGCCGGAGCACCGGCGGGCGGCGGCGGGAGATGAGTTCCAGGAAGAAGCC
GTCGAGGATCGAGCCGTTCCGGCACAAGGTGGAGACCGACCCGAGGTTCTTCGAGAAGGC
GTGGAGGAAGCTCGACGACGCCATCCGCGAGATCTACAACCACAACGCCAGCGGCCTCTC
CTTCGAGGAGCTCTACAG                                          
 Intron 1-24,167,1014,165,7831,319
gtttcccatccccccatcccccatc..........taatattgtccttatattctggcag
2OMERI08G04350.1.exon24,165,7824,163,3222-2,461
GACTGCATATAATCTGGTACTTCACAAACATGGGCCAAAGCTCTATGACAAACTGACAGA
AAATATGGAAGATCACCTGCAAGAGATGCGTGTATCGATTGAGGCTGCTCAAGGTGGTTT
GTTCTTGGTAGAACTACAGAGGAAATGGGATGACCATAACAAGGCTTTGCAAATGATCAG
AGATATCCTGATGTATATGGACAGGGTTTTTATTCCCACCAATAAAAAGACACCTGTATT
TGATCTTGGATTGGATCTTTGGAGAGATACTATTGTTCGGTCACCCAAGATCCATGGAAG
GTTGCTTGACACTCTTCTTGATCTCATACATAGAGAGAGAACGGGTGAGGTGATAAACAG
ATCCTTGATGAGGAGTACAACTAAAATGTTGATGGATCTAGGTTCTTCTGTTTATCAGGA
TGATTTTGAAAGGCCATTCCTTGAGGTGTCTGCTAGTTTTTATAGTGGCGAGTCACAAAA
ATTCATAGAGTGTTGTTCCTGTGGTGAATATCTTAAGAAGGCTCAGCAGCGGCTTGATGA
AGAAGCGGAGCGTGTTTCACAGTACATGGATGCCAAAACAGACGATAAAATAACTGCTGT
TGTGGTGAAGGAAATGCTTGCGAATCACATGCAGAGGTTGATTCTTATGGAGAACTCAGG
TCTTGTTAATATGCTTGTGGAGGACAAGTATGAAGACCTGACCATGATGTACAGCTTGTT
TCAACGTGTTCCTGATGGTCACTCGACAATTAAATCTGTGATGAATTCACATGTTAAAGA
AACCGGGAAGGATATGGTAATGGATCCTGAGAGGCTGAAGGACCCTGTTGATTTTGTCCA
GAGGCTTCTAAATGAGAAGGATAAGTATGACAGTATTGTTACCACTTCCTTTAGCAATGA
CAAGAGTTTCCAAAATGCTCTGAATTCCTCCTTTGAGCACTTCATTAACTTAAACAATAG
ATGCCCTGAGTTCATCTCGCTGTATGTTGACGACAAACTGCGTAAAGGAATGAAAGAGGC
CAATGAGGAGGATGTTGAGACTGTCCTGGACAAAGTGATGATGCTGTTTAGGTACTTGCA
AGAAAAAGATTTGTTTGAGAAATACTACAAGCAACACTTGGCGAAGCGCCTTCTATCTGG
GAAGGCTGCTTCTGATGATTCTGAGAGAAGTATGCTTGTGAAGCTCAAGACAGAATGTGG
ATATCAGTTCACTTCAAAATTGGAGGGCATGTTCAATGATTTGAAGACCTCTCATGATAC
CACACAGCGATTTTACGCTGGTACTCCTGATTTGGGGGATGCCCCTACTATATCTGTCCA
GATACTCACCACTGGGTCTTGGCCAACACAACCATGTAACACCTGCAACCTTCCTCCTGA
GATTCTTGGCGTGTCTGAGATGTTTCGGGGTTTCTACCTTGGTACCCACAATGGCAGGAG
ACTGACATGGCAAACAAACATGGGCACTGCAGACATCAAAGCAGTATTTGGAAATGGCAG
CAAGCACGAGCTAAACGTGTCGACCTACCAGATGTGTGTTCTCATGTTGTTCAACTCGGC
GGACTGTTTGTCTTACCGTGATATCGAGCAGACTACAGCGATACCATCCACGGACCTGAA
GCGCTGCCTTCAGTCTCTCGCGCTTGTGAAGGGCAAGAACGTTCTGCGCAAGGAACCTAT
GAGCAGGGACATCTCCGACGATGACAACTTCTACGTCAACGATAAGTTCACCAGCAAGCT
GTTCAAGGTGAAGATCGGCACGGTGGCGACACAGAAGGAGTCTGAGCCAGAGAAGATGGA
GACCCGGCAGAGAGTCGAGGAGGACAGGAAGCCTCAGATCGAGGCGGCCATTGTGAGGAT
CATGAAATCGAGGAGAGTGCTGGATCACAACAGCATAGTGACAGAGGTGACGAAGCAGCT
GCAGCCTCGTTTCATGCCGAACCCTGTGGTGATCAAGAAGAGAGTCGAGTCTCTGATTGA
GCGCGAGTTCTTGGAGAGGGACAAGACAGACAGGAAACTGTACCGGTATCTTGCATAGTT
ACTCGTTTTTTTTTCTTCTGGATTCTTTAACCTGACCATAAGTAAACCGTGGTCTATGTA
TACCTGTTATATCACGATAATGCTTTTGGTTGGATTAGGTTTTGGCCGCTGGATCCAGGT
AACATGTGGTCTTCTTGTGGATGTTAATGTTTGCTTGCAGTTTGCGATGAATGTTACTGG
CTATTCCTGGGTGGTTTCTTCAGGTTTGAGTTTGTTCTTGTGTAGCTCTACACGCTACTC
ACGTTTGCAACCCAGGGCCGAATTACGCTTATATGAACCCTGCGAAGTTAAAAGGGAATA
TCTTTTTTTTTCAACTTTCTATTATATTTTTTCTGTGATTTTGTTCCATTGAAAATGTAT
GCGTGTGTATATTTATTACTAGCATTAGTGAAAAATAACTAATACCAAGTGTAGTATCTC
T                                                           
3' downstream sequence
aatctggtactttgtgtcttgttttcaaaaaataagtatttccaacagtg..........