5' upstream sequence
{"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only","provisional":{"legend":{"exons/Introns":{"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"}},"_messages":[]},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#008000"]]},"seq":[{"style":[1]}],"expect":[]}}
..........acgctttcaacggaccccacaagtcattgacgagaagcatcgccataaat
1 OMERI06G27590.4.exon1 31,132,950 31,131,935 - 2 1,016
{"provisional":{"seq":[{"style":[2,-38,1]},{"style":[1]},-14,{"style":[1,-55,0]}],"legend":{"exons/Introns":{"exon1":{"class":"e1","label":"#1044ee","text":"Translated sequence","default":null},"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"utr":{"default":null,"text":"UTR","label":"#cd6839","class":"eu"}},"_messages":[]},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]},"expect":[]},"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only"}
TGGAAAACTAAACCAACCGATTAGTAGTTAAACACAGCCATGCGGGACCCACCTCCCCCA ACCGCGTGGGTCCCACCGGGCTCCGTCGCCACGTACGCGGCCGGCTCGCCCTATACAAGC GCCACGTCGCCGGCGAGCCGCCGCCGTCTCCCCCACGACTCCTCCACCGTCCCCGGCGGC GTATATTCCCCCCCGTGGCGCGCTCCCATGGCTTCCTACTACTACTACGGCAACACCTCC AACCCTAACCCTAACCCTAGCCCGGCTCCCTCTGCTCCGCCGCTCTACCCCACGCTCACC ATGGCCGATCTCGCGCCCGTCCAGATAGGCCCCTCCCCCTCGTCGCCGATGTCCCCGGCG TCTCCGGCGACCCCCGTGGACGCCTACTCCAATGCCCCGCCGCCGTCGGAGGACGTCCTG CTCCGGATCCCGGGGGCGCAGCTCCACCTCATCGACCGCCACCGCAGCTACCCGCTCGCC GCCGGCGACCTCTCGCTGCTCCGCATCCGCTCCGGCGACACCTCCCTCGCCGCCATCGCG CTCCTCCACCCCATCCAGTGGCCGCTCGCGCGCGACGTCGCCTCGGTGAAGCTCGACCCC TGCCACTACTCCTTCTCCCTCACCGTGCCGCCCTCCGCCGACGACCCCAACCCCGGCCCT CTCCATTACGGCCTCACGCTCTACCACCCCGACCCGCGCCTCGATGGCATCCTCGCCACG TACACCAGCTTCTCCGTCCAGTCCGTGGTCGGCGGCGAGGCGTTGGCGAGCAAGGTGCGC GACGAGGTGGAGGCGGCGGCGTACTGGACGGCGGTGGCGCCCAATGTGGAGGAGTACGGC GGGAAGGTGGCTAATGCGATCGCGACGGGCGCCGGGCACCTGGCCAAGGGGATCCTGTGG TGCGGGGAACTGACGGTGGACAGGCTCCGGTGGGGAAACGAGGTCCTCAAGAGGAGGATG CAGCCCGGCGACGCCGACGCCGAGGTCAGCCCCGAGATGTTGAGGCGGATCAAAAG
Intron 1-2 31,131,934 31,131,499 436
{"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null}},"_messages":[]},"seq":[{"style":[1]}],"expect":[]}}
gtagtaactccctcacattttagtt..........aattcatgcttgtgattgttgtcag
2 OMERI06G27590.4.exon2 31,131,498 31,131,332 2 1 167
{"provisional":{"seq":[{"style":[1]},-1,{"style":[1,-46,0]}],"flourishes":{},"legend":{"exons/Introns":{"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"intron":{"label":"#aaaaaa","text":"Intron sequence","class":"ei","default":null},"utr":{"label":"#cd6839","text":"UTR","class":"eu","default":null},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]},"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only"}
GGTCAAGACGGTGACAAAAATGTCTGAGAAAGTGGCAACTGGAATACTATCTGGAGTTGT GAAGGTTACTGGCTATTTTACAAACTCAATAGCTAACTCAAAAGCTGGCAAGAAGTTCTT TAATTTATTGCCTGGAGAGATTGTTCTTGCTTCGCTTGATGGATTTG
Intron 2-3 31,131,331 31,130,535 797
{"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"legend":{"exons/Introns":{"flanking":{"default":null,"class":"ef","text":"Flanking sequence","label":"#008000"},"intron":{"class":"ei","label":"#aaaaaa","text":"Intron sequence","default":null},"utr":{"label":"#cd6839","text":"UTR","class":"eu","default":null},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"}},"_messages":[]},"flourishes":{},"seq":[{"style":[1]}]}}
gtatggttccttaatttttttatgg..........acatatccttaattgatgccaacag
3 OMERI06G27590.4.exon3 31,130,534 31,130,450 1 2 85
{"provisional":{"seq":[{"style":[1]},{"style":[1,-24,0]}],"legend":{"exons/Introns":{"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"default":null,"class":"ei","text":"Intron sequence","label":"#aaaaaa"},"utr":{"class":"eu","text":"UTR","label":"#cd6839","default":null},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null}},"_messages":[]},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[]},"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only"}
GGAAGATTTGTGAAGCAGTCGAAGTGGCTGGAACGAATGTTCTGTCCACATCATCAACTG TGACTACCGGTCTTGTATCCCACAA
Intron 3-4 31,130,449 31,130,254 196
{"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only","provisional":{"seq":[{"style":[1]}],"legend":{"exons/Introns":{"flanking":{"default":null,"label":"#008000","text":"Flanking sequence","class":"ef"},"intron":{"label":"#aaaaaa","text":"Intron sequence","class":"ei","default":null},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"default":null,"text":"Translated sequence","label":"#1044ee","class":"e1"}},"_messages":[]},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[]}}
gtacgagttattctcctttcgactc..........ctcttacatttggtctgctctgcag
4 OMERI06G27590.4.exon4 31,130,253 31,128,588 2 - 1,666
{"provisional":{"expect":[],"seq":[{"style":[1]},-2,{"style":[1,-9,2]},{"style":[2]},-22,{"style":[2,-45,0]}],"flourishes":{},"legend":{"exons/Introns":{"flanking":{"default":null,"class":"ef","text":"Flanking sequence","label":"#008000"},"intron":{"default":null,"text":"Intron sequence","label":"#aaaaaa","class":"ei"},"utr":{"default":null,"text":"UTR","label":"#cd6839","class":"eu"},"exon1":{"default":null,"label":"#1044ee","text":"Translated sequence","class":"e1"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"],[7,"cd6839"]]}},"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only"}
ATATGGGGAGAAAGCCGCGGCTGCGACCAATGAAGGGATGGATGCAGCAGGCCACGCAAT CGGGACAGCATGGGCAGTGTTCAAGATCCGGCAGGCCTTGAACCCGAAGAGCGTCCTAAA GCCGACCTCACTCGCCAAGTCTACCATCAAAGCAGCAGCTGCTGACTATCGTGCAAAGCA AAAGAAATAGTTCGTCCTCAACGATCAACTCAGTGTTGGAACGGTCCTGACTAACAGAAG CTCTGCCCCAATCCATCCCAGCTAGTTTTTGCAGATGTCTTCTCTTGTTTTCTTTTTTTC ACGAGTCATGGGTGTGCTGCACTACTGCTACTGTTGCTTGTAATATATGTGCTGAAAAAC CAAAAGCAACTCCTGAACGCTGATGATGTACTACCACTTTTGTGCTGAATGATGCAATGT ACGGAAATCTGTGGTGTTGCAAAATTTGTTTCTGCGTCCTGAGGTAAATCTTTCAGTGCT GTCTGCTACTCTGCTGTGCTTGCTTTGTTTGGTTATATAGATTGTGATGGTTAATATAGG CTATTAGTTCTTTTTTCCTTGACGACAATCGGGTGCTCTTATGCAGATACGCAATACTAG CCCCATGATTGGGTTTAGGTGGTTGTCTTGGCTATCGTATTGAAGAAAGATTAACAACAA AAAAAAACAAACAGTTCGATTGAAAACACAGAAAAGGTAGGAGCAAGGCAAGACAAAGAG TTCAATTGAAAAACAAATAGAAAAGTAGGAGAAAGGTAAAGCAAAGAGTTCAATCGAAAA ACAGAGGAAAAGCAAAGAGTTCAGTCGAAAAAGAGGAAGAACAAAGGCTTTTTTCTTCAG AACAAAGAGTTCAATCGAAAAACAGAGAAAGTTCAAAAGAAAAACAGAAGAAAGGCAATT TTTTCAGGGGTGGACATTTCTTTCCTTTTCCACATCAAACCATTAAGAGCATGTACAATA ACTAACGATAAGCCTGCCACATCAGCTTTTACAGTGAGTTGGAGGTGAGAGAGTATATCA CCGGGCGACTATTTAAGCGCTAGCTGCACTCGCGCTCCAACGCAAGCATGAGCAATTCAA CCAATTAACTGCCATGCACTGCAACTTATATCAGGAGAGAGAGATAGAGCACGGAACAAT GAGGAAAACAATAGTTTAGCTAACAATGTATTGATTAAACAATGATTTTTACTAATATGA AAATTTTTGGAGTAAAACAACTAGACTTGCTCTAATCTCTCTTTCCATTACCATGGCGGG GCTCTTGACGAGAAGGGCAGCGTCGTGATCAATCATCTGTCTGGTGGGCCCACCACCATA GACTCGGGAGGCCCAAGTTGATCCCAAGCCGCACGATCAAAGCCGATGCGCGTCATGATT GGATTTTTGCCCTTTGCCCCCTCCCTCGTGGTGGGGTGCACATGACACGACCGCTTCCGC GTTTCTTCTCGGCGACGCACCCCCCCACACACACGGGACACCACCTCCATTCGCTCCCCG CCACACAAGTACACAACACAAACCCCCTTCTTCGCTCGCCGCCGCCGCCGCCTCGAACCG GAGCTCGCTTCCCTCCGAGGCGGTAGGCCACCTCCTCCCGGTGGCTCCCCCATCTGCCCG CCCGGCGCCGAGCTGGGGATCCATCCGCCCGCGATTCCTCTCGCCG
Intron 4-5 31,128,587 31,128,376 212
{"provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"utr":{"text":"UTR","label":"#cd6839","class":"eu","default":null},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"}},"_messages":[]},"seq":[{"style":[1]}],"expect":[]},"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only"}
gtaacgtctccctccctccctatct..........ctaatcatggtggctttgtgaccag
5 OMERI06G27590.4.exon5 31,128,375 31,127,524 - - 852
{"provisional":{"ref":{"style":[[0,""],[0,"color:#cd6839"]]},"flourishes":{},"legend":{"exons/Introns":{"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"label":"#aaaaaa","text":"Intron sequence","class":"ei","default":null},"utr":{"default":null,"text":"UTR","label":"#cd6839","class":"eu"},"exon1":{"class":"e1","text":"Translated sequence","label":"#1044ee","default":null}},"_messages":[]},"seq":[{"style":[1]},-13,{"style":[1,-11,0]}],"expect":[]},"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only"}
GTGTGCTCTCCATTGCCAGCTGCCGGCGGCCATGGATGACGGGGACCTCGATTTCTCCAA CCCGGACACATTCCTCTGCCCGGCCGTCGGTGGTGCTGACCCCGACGGCAGCTGCTCCAT GGACAGCTATTTCGACGACATCCTGAAGGATACGGAGCACCATGCATGCACCCACACCCA CACCTGCAACCCGCCTGTGCATGACCTCTCACACACCCACACCTGCGTCCATGTCCACAC CAAGATCGTCTCCGCCCCATCCGACACTCCGTCGGATGCTGCCGAGACCGCCGAGTCCCC GACGGAGAACAATGCCTCCAAGAAGCGGCCGTCGGGTAACCGCGCCGCTGTGAGGAAGTA CAGGGAGAAGAAGAAAGCTCACACTGCCTCGCTGGAGGAGGAGGTTGTTCATTTGAGGGC TCTAAACCAGCAGCTCATGAAGAAGCTCCAGAACCATTCCACGCTCGAGGCAGAGGTATC CAGGCTGCGGTGCCTGCTCGTTGATATTAGAGGAAGGATTGAAGGAGAGATTGGGGCTTT TCCTTATCAGAGGCCAGTGAAGAACATCGATTTGGTTTCTAGTGTTGATCAGGGAAGTTA TCTTGGTGGTGCCCAGGTTATGAACTCCTGTGACTTTCGATGTGCCGACCAGATGTATTG CAGTCCAGGGATGCAGGTGAGAACAATGGGTGAGGATGGCGCTGTGAGTGGTCAGGTGTT GGGGCAAGGTGCCTGTGATATTGCGAGTATCCAATGCCAAGGTGCAAAATCTGGATCTGC AAAGCTCCCAGTCTGTGGGGCTATGGGTACGATGCCTGTCGGCCGTATGCCAAATTCTGA AAAGAAATGAAG
Intron 5-6 31,127,523 31,125,495 2,029
{"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only","provisional":{"expect":[],"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"class":"ei","label":"#aaaaaa","text":"Intron sequence","default":null},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null}},"_messages":[]},"flourishes":{},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}]}}
gtcagttatgtttcctttctgtttt..........aacacatgctactttctcttttcag
6 OMERI06G27590.4.exon6 31,125,494 31,124,984 - - 511
{"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only","provisional":{"expect":[],"seq":[{"style":[1]},-7,{"style":[1,-30,0]}],"ref":{"style":[[0,""],[0,"color:#cd6839"]]},"legend":{"exons/Introns":{"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"},"intron":{"class":"ei","text":"Intron sequence","label":"#aaaaaa","default":null},"utr":{"default":null,"class":"eu","label":"#cd6839","text":"UTR"},"exon1":{"default":null,"class":"e1","text":"Translated sequence","label":"#1044ee"}},"_messages":[]},"flourishes":{}}}
GATCCTCATCGCCAAGACTTAAGTCAGGGGCATTCAAGAAACATCGCATAAATTGCTAGC GTCTATCTCTAGGAATGTGTGTGATTCTGTCGCCAATGATGCTTCCACAGTGCCTGAGGC GATTTAAGTTCGTTAGCTATGAAGCTGTCAGTATATCCTCTAGTTTGCTTAGCCTTCCCT CCGTTTTTTTCTTGATGTTGGAAATGGACAATATTGCTGCTAGTGACTCCCAAATGCTCC CTGATAAAAAGCTTAAAGATTCAGCATCATTGTTTTATGCCAGGATACATGTCCAGATTT GGCTAGGCCTCAAGTTTTGATGTGAATCTCTTGTAAATACATCATGTATGAAATCTTTGG AGTAACATGGATTCAATCATTGTTTGGATGTTCCATCGATTTTTTAATTAATCAATATGT TGCGTTACTTGGGTCTAGTCGAATGCATATGCAGGAGCATCAGTTTGAGCCAGGAAGTAT TGTTCATTTTTTGGTACACAGTCGCAGTCGC
3' downstream sequence
{"url":"/Oryza_meridionalis/Component/Transcript/Exons/exons?g=OMERI06G27590;r=60X0P+031124984-31132950;t=OMERI06G27590.4;db=core;time=1743664017525.525;adorn=only","provisional":{"expect":[],"ref":{"style":[[0,""],[0,"color:#008000"]]},"flourishes":{},"legend":{"exons/Introns":{"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null},"intron":{"default":null,"label":"#aaaaaa","text":"Intron sequence","class":"ei"},"utr":{"default":null,"label":"#cd6839","text":"UTR","class":"eu"},"exon1":{"label":"#1044ee","text":"Translated sequence","class":"e1","default":null}},"_messages":[]},"seq":[{"style":[1]}]}}
aatatggacttagaccaagtttaatagaatagccaactactaggtttaaa..........
Oryza meridionalis (Oryza_meridionalis_v1.3) ▼ 
Summary
Sequence![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
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