Oryza meridionalis (Oryza_meridionalis_v1.3) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 5: 13,855,329-13,862,752 reverse strand.
This transcript has 10 exons, is annotated with 26 domains and features and maps to 32 oligo probes.
This transcript is a product of gene OMERI05G10960 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........cagcacagtcacacacccacacccacacccaaacaaaacaaaaacacaca
| ||||||
| 1 | OMERI05G10960.1.exon1 | 13,862,752 | 13,862,468 | - | 2 | 285 |
GCACAGCAGCACCTTTAATAATGGCCGCCCCCCTCATTCCTTCACTTCTCTCACTTTCTT GTTTGTTCGTCTCTCTCTCCCTCCCTCCGACTCCGACCGCACCCAGCCCACGCGGGATTC GGATTCCCTCCACCCTTTCCGCCACCCGCGAGAGGGAGACAGCGCCGGCGATCGGTGACC GATGGCGGCCGCGGTGCGGGTCGACAAGGCCACGAGCGAGCTGCTGCTCGGCCCCGACTG GACCCTCAACATCGACATCTGCGACGCCGTCAACTCCGATCACGG |
| Intron 1-2 | 13,862,467 | 13,861,112 | 1,356 |
gtctgtcactcccccctctctctct..........agtttaaaataatgcattcattcag
| |||
| 2 | OMERI05G10960.1.exon2 | 13,861,111 | 13,861,033 | 2 | 0 | 79 |
GCAAGCAAAAGAGGTGATTAAAGCTTTGAAGAAGCGTCTCCAGCACAAAAATTCAAAGGT TCAGTTTTTTGCTTTAACG |
| Intron 2-3 | 13,861,032 | 13,860,945 | 88 |
gtatgcttccctgcttaaataacct..........gaacaccatgcaattgcttttgcag
| |||
| 3 | OMERI05G10960.1.exon3 | 13,860,944 | 13,860,846 | 0 | 0 | 99 |
TTATTGGAAACTCTAATGAAGAATTGTGGGGATCATGTGCATTCACAAGTTGTAGAGCGT GATATACTGCAGGAGATGATTAAAATTGTTAAGAAGAAG |
| Intron 3-4 | 13,860,845 | 13,860,059 | 787 |
gtaacattttttccctatggcaatt..........tttttttagtcatggctattttcag
| |||
| 4 | OMERI05G10960.1.exon4 | 13,860,058 | 13,859,945 | 0 | 0 | 114 |
ACTGATATGCAGTTGAGGGACAAAATTCTAGTACTCCTTGAATCTTGGCAAGAAGCATTT GGTGGGAATGGTGGGAAGCATCCCCAGTACTACTGGGCATATGCTGAAATGAAG |
| Intron 4-5 | 13,859,944 | 13,859,072 | 873 |
gtctgttcaatatgtcatgaactgt..........aatcagtgattatctttatctgcag
| |||
| 5 | OMERI05G10960.1.exon5 | 13,859,071 | 13,858,902 | 0 | 2 | 170 |
AAATTGGGCTTGGAATTTCCTCGGCGATCACCTGATGTTGCACCAATACTTACTCCTCCA CTCACACGCCCAACATCTTTGGAATCTTATCATCAACCAAGTTACGGAATGCCAGTTAAT TCTTCCTCTAGATTTGATGAGGCAATGTCATCTAACGAGCCTTCCCTGAG |
| Intron 5-6 | 13,858,901 | 13,858,818 | 84 |
gtgacattattttaatatgttttat..........gtatgacatttattttttcttttag
| |||
| 6 | OMERI05G10960.1.exon6 | 13,858,817 | 13,858,736 | 2 | 0 | 82 |
TTCATCGGAGATGGAACGCATGTTAGGTGCTGTTGAACTATTAAGCGAGATGCTGAAAGC AGTGAATCCACATGATCGTGGG |
| Intron 6-7 | 13,858,735 | 13,858,522 | 214 |
gtatgacatgtgatgtctatttgat..........agcaaaaaccttttcggcaatgtag
| |||
| 7 | OMERI05G10960.1.exon7 | 13,858,521 | 13,858,436 | 0 | 2 | 86 |
GCTGTCAACGATGAAATTATCACAGAGCTTGTGAAACAATGCCGGTCGGACCAGAAAAAG ATCATAAGTTTGGTAACTTCATTAAG |
| Intron 7-8 | 13,858,435 | 13,857,552 | 884 |
gtatatacttctatgaacactctgc..........aagttcatcttctgcatcattacag
| |||
| 8 | OMERI05G10960.1.exon8 | 13,857,551 | 13,857,294 | 2 | 2 | 258 |
AGATGAGGAGCTCTTGGGCCAAGCTCTTGACTTGAATGACAGGATGCAGATTCTGCTTGG CAAACATGATGCAATTGCATCAGGTTCTCCTTTACCAGATGAAGAAACAGATATCATGAA TGAATCATCAGCAGAAACCACTTCAACTACAGTGGCAATAGGGGCTCCTCGAGCTGCAGT TACGGCTATAGTGCCAACCACTGTTTTCGATGAAGAGGATGAAGATGAAGATGACGAGTT CTCTCAGCTTGCTCGCAG |
| Intron 8-9 | 13,857,293 | 13,857,194 | 100 |
gttattctgattgctgacaatcttc..........ttgtgatcaggaattcgaaattcag
| |||
| 9 | OMERI05G10960.1.exon9 | 13,857,193 | 13,856,446 | 2 | 0 | 748 |
GTCTACAAATGCTGAGAGCACCCCTTCTGGCGTAGCAACATCTTTGTCGACCGCCCATGA CGATGAGATAACAAGTTCAGGATCTTCTGGTACCTCTACAGTTTCACCACCTGTTCAAAG CCATGCATTGGCACTGCCTGATCCTCCAGCTCCTGTTAGAACTGCAGAAGAGCAAGTTAT GAGTGACCTTCTTGCACTCACCATATCAAACCCTTCACCACCTCAAACTCCACCAACACC TGAAGCTACCACCACCATGAACCAAGGTGGCTCGCAAGCCAATGATCATCCACAACCTAG TTACTCAAACCAAGGACTTGCTGCTGCATCATACAACAGCTATGTTGCTCCTTGGGCTCA GCCTCAATCTCAAACTCCTGGCATTCAGCTTCAGCAGCATCAACAACCATCCCAGTCACA ATTGCCCTACAACTCATCTCCCTACCCGCCACCGCCATGGGCATCTGAGGACACCGCCGA GTCCAACCCTTTCATTGCAGCTTCACTGAAGAACCAACCTACTTCCGCCTCGCCGGTTAA TGTACCACTGAATTTTAGGCCTCTACAGCAATCAAATTCTTTCGGGGTTCCGCTTCGAAG TGCCAGGCCACAATCGCCGATAAATGGGAGCACTAAGCAACCGATGTCTGCAGGAGCTCG CAGGCCATCTTATGTTTCTTCTAACAAATACTTCGATGATCTGTTTGAGAAAAATGCTGA TGGCAGCCTGATGAAGGTGGGCGGTAGC |
| Intron 9-10 | 13,856,445 | 13,856,078 | 368 |
gttggtgggggcgcatcctcgccat..........gtgtgcaattttacccatgtttcag
| |||
| 10 | OMERI05G10960.1.exon10 | 13,856,077 | 13,855,329 | 0 | - | 749 |
AAGAATCGCTGACCAGCAGAAGGTTTAAACAATTCTGACCGAGTCAGGCCATAGCCACAA CAACTCTGCCCTTTCCAACATCTTCATCAAAATTCAGAGATAGTTGTAAAACCGTTGGAG CAGCATAATTCACCCCAGGCATGCAGATGAAGATCATACAGGCAAATTACTTGCACAATT CTCCTCAACGAAGAAGATGGAAATACACTACCAATAATACATTGATCACACATCCTCTGT GATAGTATGATCTTCTTCATGTCAGCAGTTTATTTTTGTAATGTACAGAGCTCTCAAGAT GTTCATGGTCATGGCAGCCATGGCTGTGTCACTTGCCGAAGTTCTGGTACTTGTAGAGCT TGGCACACGCGAGGTAGTACCCGAAGTTGATGGTGACGAGCACGGCGAGCAGCCAGTAGA GGTTCTCCAGTCTGGAGGCGTTCATGTTGTCCGGCAGCCACGCGGTGGCGCGGCGCACGG CGTCGACGAGCGCCGTGCTGAGGTAGAACCCGAGCGCGACGATCATGGCGACCATGCCCG ACGCCGTGTTCTTGAGCGACGGCGGGAACTCCTGGTAGTAGAGCGTCACCTGCGCCGGGA AGTGGAACGCCTCGCCGGCGCCGGACAGCGCGAACGGCAGCACCAGCCACGCCGCCGGCA GCGGCGACACCCACGCCGGGTTGTTCCGCGCCGCCTCGCCGTGGGCGCGCACGGTGGCGA GGCGGCGGCGCTCGACGGCGGCCGACGCG |
| 3' downstream sequence |
gccatgctcagcacggtcagcacgtggcccacgccgatccgctgcagcgg..........
|
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Ensembl Plants release 60 - October 2024 © EMBL-EBI EMBL-EBI
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