Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 24 exons, is annotated with 19 domains and features and maps to 46 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI04G18360.23338985aa
 
Protein coding
A0A0E0DH85 Ensembl Canonical
-OMERI04G18360.33624981aa
 
Protein coding
A0A0E0DH84 -
-OMERI04G18360.13532981aa
 
Protein coding
A0A0E0DH84 -
-OMERI04G18360.53462927aa
 
Protein coding
A0A0E0DH87 -
-OMERI04G18360.43370927aa
 
Protein coding
A0A0E0DH87 -
Markup
  • loaded
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........tttgtttttctttttctctgtcggttgtggtgggctctgaccctgctgtt
1OMERI04G18360.1.exon123,294,36723,293,949-0419
GGCTGCCATTGCCAAACTGCCATCTCCTCCTTTTATAAACGCTGGCCTCTTCCTGTGGTC
TCACACAAATAGGAGTACTCAAGTCTCAGACAGTGTGCAGCATTAGGAGGGAGAAGCAGA
AGAAAAGAAGCCTCTACCAACCTAATCCTTAACTGCTCTCCAGGCACAAACGCATCCACT
GCCACCTCTCGTTTTCTTCCTCTCTCTCTCACTGACCCTGTGTTGGTCGGTTTCGTTCTT
GGTTTCCTCGAGCCTGTTCCGTCCTGATTCCTGAACAAGAGGTTGGCAACTGCGAGAGAA
GTTGTTGCCGGAGTGTTGGTTCGTCTGTCCGTGGATTCTTTGGTTGGTGTTCTTCGGCTG
GTGGTGGTGGTGGATCAGCCATGTTCGTCAGGAAGCTTGTGGAGAAGGCCTCCAAGAAG 
 Intron 1-223,293,94823,292,0911,858
gtaactgaatctctcactctcctct..........tctaactactattattcctacgcag
2OMERI04G18360.1.exon223,292,09023,291,95702134
CATCACATCGGAGGTATCAGCGGCCTCCGCGCCGAGGACGTGAGCCCGCGGCTGGCGTTC
CACTACGGCGTCCCCGCCGACGCCGCGCTCCTCGCCTACGACCCCGCCCTCCACGTCCTC
GCCGTCGCCACCAG                                              
 Intron 2-323,291,95623,291,88671
gtagcccccccccacttctccttcc..........ctcttctgctgccttttctctgcag
3OMERI04G18360.1.exon323,291,88523,291,8012085
GAATGGGCAGATCAAGCTGTTCGGCCGCGACAACACGCAGGCGCTGCTCCAATCCCCGTC
CCCCGTCCCCTCCAAGTTCCTGCGG                                   
 Intron 3-423,291,80023,291,70992
gtatcgtcgctgattcttttttact..........tctttgtttcgcacctccgtttcag
4OMERI04G18360.1.exon423,291,70823,291,6790030
TTTGCCGAGGGGCAAGGGGTTCTCCTGAAC                              
 Intron 4-523,291,67823,291,566113
gtgaacgccaagaaccagatcgagg..........gctaatggaaaatcatcttatgcag
5OMERI04G18360.1.exon523,291,56523,291,4740292
ATTTGGGACATCGACACAAAGAAGTTGTGTTATGTGCATCCGTTCGAGAAGGAAATCACG
GCATTTTCCGTTCTGCAGAATAGCTTCTACAT                            
 Intron 5-623,291,47323,291,39876
gtaagcatcggttgctttacctaca..........tgattagaagatcttgtctatgcag
6OMERI04G18360.1.exon623,291,39723,291,29421104
CTATGTGGGTGATAGTTTTGGGAATGTGTCCCTGTTGAAGCTTGACTTGGGTCAGACATG
TCTAGTTGACATGCCATATTGGATTCCTTTCTCTGAATCTTATG                
 Intron 6-723,291,29323,291,20094
gtaggtttaccaatatgtcttggtt..........ggaatctaattgattcttgctgaag
7OMERI04G18360.1.exon723,291,19923,291,1271273
GTTCTGGAGCAAATGTTGGTAATGAGGTTGAAGTTGCATTTGTATCGCCACAGCCTTTGG
CTGAAAATAACAG                                               
 Intron 7-823,291,12623,290,978149
gttggtctcttctgaatattctgta..........tgtctaattaaggtacactcttcag
8OMERI04G18360.1.exon823,290,97723,290,59620382
GGTGCTCATTATCTTCAGAGATGGGATTATGTCTTTGTGGGATATTAAGACGAACAAAGT
GGTATCTTTATCCGGCAAATCTATGCAACAACAGTCACATCAGGAGGCTAAAACTGTAAC
ATCGGCATGCTGGGCTTGTGCCAAGGGAAGCAAAATTGCTATTGGATTTGATAGTGGTGA
TATATATCTTTGGTCTATTCCTGATATTTTAAATGCACAAAATCTCTCATCGATGGGCAA
TCAGAACCTACCTCTTCAGAGGCTTAACCTTGGATACAAGCTAGACAGGGTGTCTATAGT
CTCTTTGCGATGGGTCAATAGTGATGGAAAGGCAGGGCGTTTGTATGTTAATGGATTCAG
TGATCATGCATACCTATTTCAG                                      
 Intron 8-923,290,59523,289,5121,084
gtgaaacactaaattagtgcatttt..........aaacaactatgaatgctttgaccag
9OMERI04G18360.4.exon923,289,51123,289,26600246
ATAGCGTTTTTAATGGGCTTTGACCAAATAGCTTCATATTTTGATGATGGACAGGACTAC
TTTTCATCATTGGCCACCAAATACCCATGGTTCCTTTCAATGAAAGATAAACATCAGACT
TCCACAGGTTCTGCCGACATTCATAAGACCAGAAATCTCTATGTAACTGGACATCTTGAT
GGAACCATAAGGTTTTGGGATGCATCATGTCCTCTTTTACTGCAGAATTTAATGATAAAG
CAGCAG                                                      
 Intron 9-1023,289,26523,289,129137
gtgatttaaaactccaattattttt..........caactcattcttgttattgtttcag
10OMERI04G18360.1.exon1123,289,12823,289,0360093
AATGAAGAGAATAGTCCAAGTGGCACCCCTATTACATCATTACAGTTTGATATGTCCTCC
AGCATTCTAATCTATGGGGATAGGAGTGGAACG                           
 Intron 10-1123,289,03523,288,95185
gtaagctatttcatggatataaggt..........gtaaaactttttttcttcctgttag
11OMERI04G18360.1.exon1223,288,95023,288,8930158
GTCCGTATAATCACATTCAGAAAGGACTCCAGCGATAACATATTCTCCTTTTTACATG  
 Intron 11-1223,288,89223,288,596297
gtataatttactctctgtcttgcta..........ttcatcttttacatggactggtcag
12OMERI04G18360.1.exon1323,288,59523,288,48310113
CGAAGCAAGGGGAGAGCTATAATGTCAGATGTATAAAGCTCAAAGGCGCTGTAACCTCAA
TCTCTTTGATCTCGAACTCAAAGCGTGTTGCTGTTGGAACAGAAAAAGGGATT       
 Intron 12-1323,288,48223,287,997486
gtaagtaatctgtaatgtttttgca..........tgctatactcaattcatgttttcag
13OMERI04G18360.1.exon1423,287,99623,287,75001247
GTATCAGTTGTCAGCATTGAAGATGCATCGATCTTGTATCAAAAACAGCTTGAGTGTCGG
GTATCTGGTGGAATCGCATCTTTGCAATTTGAAATGTACAGCCATAATGGCTACGACAAG
GATCTTTTGCTAGTAGGAATGGAAGATTCAACTATATTTATTCTTGAGGAAGAAACTGGA
AAACTTTTGAATACCAACCCAGTTCAGACAAACAAACCCTCCCGAGCCCTATTGATGCAG
ACACTTG                                                     
 Intron 13-1423,287,74923,287,619131
gtgagctatatggccttgtataccc..........attctaatacatttatacacgacag
14OMERI04G18360.1.exon1523,287,61823,287,50010119
AATTATCACCAGATGATCCATCGGTGTCAGATACCCACGATACAGTATCGAAAGAATCAC
TGTTATTGCTTTGCACTGAAAATGCAATCCGCTTATTTTCCTTGAGCCATGCAATTCAG 
 Intron 14-1523,287,49923,287,42080
gtatttttggttcccaattatttat..........ttttaatcgtggagctccccttcag
15OMERI04G18360.1.exon1623,287,41923,287,29502125
GGAATGAAGAATATAATCAATAAGAAGAAACCGAATGGTAGTTGCTGTTTTGCATCTCTT
ATCCACAGTGTTTCTTCTGAAATTGGACTTCTACTTGTCTTCTCCAATGGCAAAATAGAG
ATAAG                                                       
 Intron 15-1623,287,29423,287,20986
gtgaggcaacagttgagttaaaaac..........aacagcgaaccttgtgaaactgcag
16OMERI04G18360.1.exon1723,287,20823,287,09420115
ATCCCTCCCAGATTTATCTATATTGAAGGAAGCCTCATTAAGAGGTTTTTCATATACAAG
AAACTTGAATTCTTCTAGCTCCATAGCATGTTCATCTGATGGAGAAATCATCTTG     
 Intron 16-1723,287,09323,286,958136
gtatgaactgcactttttttttctc..........atactatagcctttttattatgcag
17OMERI04G18360.1.exon1823,286,95723,286,9020256
GTTAACGGAGAGGAGACATTTTTTTTCTCTACTCTCTGTCAGAATGACATCTACAG    
 Intron 17-1823,286,90123,286,678224
gtatgctgaaaattttacagtatca..........ttgttttactatgctctgtactcag
18OMERI04G18360.1.exon1923,286,67723,286,5842094
GCATGTAGACAGCATTAATACAATATACAGAAAAGACAACTTGCCCAGGGAAGAATCTTC
TTATGTAGTGAAGTCCCCCAGAGAAAAGAAAAAG                          
 Intron 18-1923,286,58323,286,51074
gtaattagctaatcttatgggtggt..........ctatctaagaatgaaaattctacag
19OMERI04G18360.1.exon2023,286,50923,286,31701193
GGCATATTCGGAATGATTATGAAAGACGCTAAAGCAATCAAGGGAAAACAGAGCGATGCA
AATGGAGATGAACAATTTACTGCAACAACTTCCGAAGAGCTGTCTTCAATATTTTCATGT
GCTAATTTTGCTCCAGTATCTGAGAAGAGGAACAGTTCAATAAAAGATGACGAGAACATT
GAACTAGACATAG                                               
 Intron 19-2023,286,31623,286,24176
gtatgtgctattattttacctatgc..........cttatggttgtatgcttctgtgaag
20OMERI04G18360.1.exon2123,286,24023,286,1421199
ATGATATCAACATTGATGATAACCCGCAAAAGCAGAAAGGACCACACTTCCCAGGTCTAA
GCAAACAGAAAATCAGCAAGGGATTCCAAAGCCTAAGAG                     
 Intron 20-2123,286,14123,286,017125
gttagtaaattatagtaatgagatg..........atattattcaattatgaatatgcag
21OMERI04G18360.1.exon2223,286,01623,285,89810119
AAAAGTTGAAGCCCAGGACAGAAGAAAAGGTGAATTCAGGGAATAGAAAACCTGAAGACG
ACACATCAGTCAGTCAAGTTGACCAGATAAAGATGAAATATGGATATGCAACAAATGAT 
 Intron 21-2223,285,89723,285,783115
gtgagtgcatagaaggactagaaat..........tcatttttaatgtttatctgaacag
22OMERI04G18360.1.exon2323,285,78223,285,7200063
GACTCCACTAGCCTACCAAAAATGATTGGGAACAAGCTGCAAGAGAATATAAAAAAGTTG
GAG                                                         
 Intron 22-2323,285,71923,285,576144
gtaacaatgtccatctgaagttctt..........atatgtaccaatgttccttttgtag
23OMERI04G18360.1.exon2423,285,57523,285,4370-139
GGCATTAATATTCGCGCTGGAGATATGGCCAATGGTGCACAATCCTTCTCGGCAATGGCA
AAAGAACTGCTGCGAAACACAAAGAACGAGAAGGCCACATCGTAGAAATGGCACATACAT
GTACCTTCCCCTTTTTCAG                                         
 Intron 23-2423,285,43623,285,40928
ttttttagtgttccttcccctctttcag                                
24OMERI04G18360.1.exon2523,285,40823,285,237--172
TTTTGAGTGTTCCTGTTCATTCAGTGCAGTTCTTCTACCACATGATATGAATCTGTTGTA
AATAATGATTGAGAATCACAGCAAGAATTTACTGGTGAATTTCTTTCCCAGATGCGTTGG
TAGCATGTATAGTACCACTTGATAGTCATCATAAATGAACTGTTTTTTTGTT        
3' downstream sequence
aagaaaataatattactgaacttttctatcttgtgaactaattcctttgt..........