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    Oryza meridionalis (Oryza_meridionalis_v1.3) ▼

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    Transcript: OMERI03G00560.1

    Location

    Chromosome 3: 456,359-471,937 forward strand.

    About this transcript

    This transcript has 14 exons, is annotated with 37 domains and features and maps to 97 oligo probes.

    Gene

    This transcript is a product of gene OMERI03G00560 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OMERI03G00560.13253773aa
     
    Protein coding
    		A0A0E0CTW1 Ensembl Canonical
    -OMERI03G00560.63159192aa
     
    Protein coding
    		A0A0E0CTW6 -
    -OMERI03G00560.23139735aa
     
    Protein coding
    		A0A0E0CTW2 -
    -OMERI03G00560.33093192aa
     
    Protein coding
    		A0A0E0CTW6 -
    -OMERI03G00560.52906594aa
     
    Protein coding
    		A0A0E0CTW5 -
    -OMERI03G00560.42629192aa
     
    Protein coding
    		A0A0E0CTW6 -

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
    Markup
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    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........ttccgaccctaaattaagaaatgagtgacccctcctcgacgtcctcgtca
    1OMERI03G00560.1.exon1456,359456,395--37 
    CTTTGCCCTTGCGCACAGCCTCCGGCTCCGGCTCCGG
     Intron 1-2456,396456,41520 
    ctcggcggctccggctccgg
    2OMERI03G00560.1.exon2456,416456,576--161 
    CGATCCCCATCCATCCCGCGAGCGAGCAGGGCGCCGTCGTTCTTCCTGCTGCTTCCGCCG
CATCCATCCTGGTGAGCACATCCTCCGCCACCGCCGCCTGCCCCGATCCCCATCCATCGC
GCGCGCGCGCGCGAGCTCGTCCTGCTGCTTCCGCCGCATCG
     Intron 2-3456,577457,220644 
    gtgacgcacatcctctttcccatct..........ctaactatgactcatcattcatcag
    3OMERI03G00560.1.exon3457,221457,538-2318 
    GCTCATTAACACTCAAGTCAAAAAAGAAAAGGAGAGAAAGAGGGAGATGGAGGAGTGGTC
GCCACCGTCATCTCCTTCGCTGGTGGTGCGGAGCCCCAGGCAGACGGTCAGCCTTCTCCG
GAACCGTCACCCATGGCGGGAGTCTCGGTCGCCCCCCACATCCACATCCACCTCGTTGGC
CGGTGGCCCCAAGCCGTCGGAAGTTTATGGCTTTGTGGGGTCCATCACCACCGTCATCGC
CACCACTGTCTACCTTGTCTGGGCATACATGCCTGAGAGTTGCCTCCGCTCTCTTGGCAT
CACCTACTACCCGAGCAG
     Intron 3-4457,539457,643105 
    gtgagaatctgcatccaggtagatc..........ttaattcggttctcttttcattcag
    4OMERI03G00560.1.exon4457,644457,76221119 
    GTATTGGGCCCTCGCAGTGCCATCGTTTGTGATAGTAGCGACGGCACTTTGCATGGTCGT
TTATGTGGGCTTCAACTTCCTGGCCACTCCTCCCCCCACTTCCTTTAACACCATTTTTG
     Intron 4-5457,763457,869107 
    gtgagttgtagttccatgccatgcc..........attgttatcttactttcattttcag
    5OMERI03G00560.1.exon5457,870457,99612127 
    ACGAGTACAGTCGAGAGCGGACCATGTTTGACCCTGCAAATGCAAATGCAACGGGAGAAG
AAGAGGAGGTAGAGAGGCCCATCGAACCTATTTCAGACATTAGCATTGACCAGATAAACA
GTCTTAT
     Intron 5-6457,997458,482486 
    gtttggtgatccgcagaaaagagcc..........aaaccgtccatctttgtgaacacag
    6OMERI03G00560.1.exon6458,483458,60222120 
    GCGTGACTTCTGCGGGAGTCGAGAGGGGGAAGAGACCATGGAGAAGTCGCCACTGGCGCG
GTTCAGGTCGCTGGTCAACAATGAAGACGTCGATGCCATAAAGCAGATGCAGCATCTCAT
     Intron 6-7458,603461,2522,650 
    gtatgaggcatagctttccctcttt..........actgctctttttgtttactctgtag
    7OMERI03G00560.1.exon7461,253461,40522153 
    ACTGGGACGATTGCAAGATAGTAATGCAGTTCTCACACATTTTAATGAATACTCTGAACA
ATGCTTTGCGGAGGTGTCTAATGACTTTGCTGGTAAAACTCGTCTTCTCAAGTCCATGAA
GGCTGATCTTGACCATATTTTCGTGAAGTCGAG
     Intron 7-8461,406461,509104 
    gtacatttcttccaggtctctttat..........tatatcttatgtctatgttgtagag
    8OMERI03G00560.1.exon8461,510461,61220103 
    GCATGAAATCGAGGCTAGCGGCAACATATCCAGATGCTTTTCCTACTGGCGCAATGGCAG
AGACGATGGACCAAGGACCTTGAAAGTCCTCTTGATTAAAACG
     Intron 8-9461,613462,514902 
    gtttatcgtttttggtaatgagatc..........tctcctctccttttttttttcgcag
    9OMERI03G00560.1.exon9462,515463,01200498 
    TTTCTTCATCCGTCTCGCATCCATTCCCCCGCCTCCCGCCATTTCACCCCGCCCCCAATT
CCAAAACCCTCGCCGCCTCCAACAACGCGCCCCCAAACCCTAACCCTAGGAGAGGGCGCG
GCGGCGGCGGCGAGGGGCGAGATGCCGAAGGCTCCGGCGGCGGAGGAGGAGGAGTTCCGG
GCGGAGGTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGGAAGAAGAACACCCCG
TTCCTGTACGACCTCGTCATCACCCATGCCCTGGAGTGGCCGTCCCTCACCGTGCAGTGG
CTCCCCGACCGCGCCGAGCCCGCCGGGAAGGACCACTCCGTCCAGAAGATGGTGCTCGGC
ACCCACACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAGGTCCAGCTCCCCCTC
GACGACGCCGAGGCAGACGCGCGCCACTACGACGACGACCACGCCGAGATCGGGGGCTTC
GGCGCCGCCTCCGGCAAG
     Intron 9-10463,013466,8643,852 
    gttcacccacnnnnnnnnnnnnnnn..........tgcatatggcttcttccttttgtag
    10OMERI03G00560.1.exon10466,865467,19100327 
    GTGCAAATAGTTCAACAGATAAATCATGATGGAGAGGTTAATCGAGCTCGGTATATGCCC
CAGAATTCATTTATAATTGCTACCAAGACAGTCAGTGCAGAAGTATATGTCTTTGATTAT
AGCAAGCACCCATCAAAGCCTCCATTGGATGGTGCATGCAATCCTGACTTACGGCTGAAG
GGACATAACTCTGAAGGATATGGATTGTCTTGGAGTATATTTAAGGAGGGCCATTTGTTG
AGTGGATCTGATGATGCTCAAATTTGCTTATGGGACATCAAAGCAAATAGTAAAAACAAA
ACCCTTGACGCTCTTCAGATTTTTAAG
     Intron 10-11467,192468,2721,081 
    gtatgtctcatgatcctattcccat..........tgttttttccttcttctgtgcttag
    11OMERI03G00560.1.exon11468,273468,42500153 
    TATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGC
TCAGTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAG
CCTGTACAGTCTGTTGCGGCACACCAGGGTGAG
     Intron 11-12468,426470,0121,587 
    gtaagtatccttttgagccttaagt..........ctttttaatgtattgtcttttgtag
    12OMERI03G00560.1.exon12470,013470,13702125 
    GTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGAC
AAGACCGTGAAACTATTTGATCTTCGGAAGATTGATACTTCCCTACACACCTTTGATTGC
CACAA
     Intron 12-13470,138470,307170 
    gtaagtttccagtaatccaatgtta..........aaacttataaatatttcataatcag
    13OMERI03G00560.1.exon13470,308470,4032296 
    GGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTG
TCTTGGCAGAAGGTTAATGGTCTGGGATCTAAGCAG
     Intron 13-14470,404471,021618 
    gtaaaagtctcagctttcaagaaat..........ctgattgacgccttgtgttttacag
    14OMERI03G00560.1.exon14471,022471,9372-916 
    GATTGACCAGGAACAAACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCAT
TCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGT
GATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTA
CCATGACGAGGATGATGTGCCGACTGATGATCCGGCGAAGGCTCCCTGAAAACCTTCGGT
AGGAAAACCAAAAGTGAACAAAATAAAACCTTAACTGTGTGACTTTAGGTACCCTCCTTT
GTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAACAGAATGTCAGTCGTAATACATACC
AGTTAGCAACCCGTCTGTCATTGCCGTTGTCATTTCTTTGTGTTGTATCCCTCAATTTAT
GCTATGACGCTATGCTGAGGCCATGGGGGTTATATACGACTTCATGCTTAGGGATTTTAG
CATTGCTTCAACGTAGGAATTTAAACGTGCTAGATTGGGTTGGTCAAAAAAAAAATCCTT
TTCTGAAACGGGTTGGGTTGGTCTTTGATTTAACTTCACCCGTCAGATCAATTTCGTGTA
TTGGTTTGTTAGGATATAACTGTACTGGAGTTGCATGCGGTGGTTCTTCCAAATAAAAAC
TTTTGTTGGGAATTGGGATTAGCTTGGTGCCTGAGTAATTAAGCTCTCAACTATATCTTC
TGTGCCAACTACATGGTGCACAGGCGATTAGTTTAGATCTGCTCCATTTCATGAAGTATA
TAGCGCATCTGTTGACGAATTGCGTGTGTTGGATATTCAGCTTGTATCTCATTGATTGCA
TTGATAAATCCATGATAGTATAAGTTACTTCCAAAGATATATTTTGCAACTGTATACACT
GTTCAGTTCAGTTGAG
    3' downstream sequence 
    cacaactgttttaattaaaaacaaatttgttttagacgtagtgatgttat..........

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