We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

Ensembl Genomes HomeEnsembl Plants HomeEnsembl Plants Home ▼
More ▼
    Search »
    Oryza meridionalis (Oryza_meridionalis_v1.3) ▼

    Favourite species

    All species

    Recent locations

    Transcript-based displays

    Configure this page

    Custom tracks

    Export data

    Bookmark this page

    Transcript: OMERI03G00350.3

    Location

    Chromosome 3: 212,477-217,068 forward strand.

    About this transcript

    This transcript has 11 exons, is annotated with 13 domains and features and maps to 37 oligo probes.

    Gene

    This transcript is a product of gene OMERI03G00350 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtFlags
    -OMERI03G00350.22529555aa
     
    Protein coding
    		A0A0E0CTS9 Ensembl Canonical
    -OMERI03G00350.32125502aa
     
    Protein coding
    		A0A0E0CTT0 -
    -OMERI03G00350.11611536aa
     
    Protein coding
    		A0A0E0CTS8 -

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
    Markup
    • loading
    ▼▲
    Show/hide columns
    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........tgctttgcccgctctctctcctcctccgccgccattgccaccgatttgcc
    1OMERI03G00350.1.exon1212,477212,70400228 
    ATGGCGTCGCGCTCCCGTGGAAGGCGCCTTCCTCCTCCTCATCCGCCGCTCATCCAGGAG
TTCCTCGACGACGACCTCTTCGATGTAGAGGTCAACTACAGCGACGAGGAAGAAGAGGAG
GAGGAAAGCGATGAAGAGGAGTCGGAGTCGGAGGACAACGAACCGGAGGAGGGGGTGCCG
GGGCAGGAGAGTATCGGGGAGGGATGCGGGCCGGCCATACAAGCTAGG
     Intron 1-2212,705213,125421 
    gtttccagcgccgccgcggagaaga..........atcgtctcttgctactgatttttag
    2OMERI03G00350.1.exon3213,126213,2150090 
    TGCCCTCAGTGTGGGAAAAGGTTCAGACCTAAGGACATTACCAATCTCTATGCACCAGAG
GTCGCAGTTCCAAATAATGATCTGGAAAAG
     Intron 2-3213,216213,29378 
    gttcgagtttattttgttgccagtt..........aaccggaccctgtttcattcttcag
    3OMERI03G00350.1.exon4213,294213,3380045 
    GAAGTATTGTATCTAAGGGGGAAAGCTGAATCCCTTGGGGAAACG
     Intron 3-4213,339213,42587 
    gtacaatttctttgggtcacctcac..........atttttatttttttattgaggatag
    4OMERI03G00350.1.exon5213,426213,4940069 
    GTGATGAAACATGAGAAATTGATAGAGGAGATGAATGAGAGATTGGTTGAGTTGACAAGT
GCTCAGAAG
     Intron 4-5213,495213,660166 
    gtatgctgtcacctattagtaccat..........tttacttgttatgtgtgccttgcag
    5OMERI03G00350.1.exon6213,661213,7140054 
    AGGCAGATTCTGTCAGAGCAGAGATTAATGAACGTTGGTAGCTCAAAGAGACAG
     Intron 5-6213,715214,673959 
    gtaatgccatctaattttaaatttc..........ttcaattgataaccatgttttgtag
    6OMERI03G00350.1.exon7214,674214,78400111 
    AAAGAATTCTTCATGGATGGACTTCGAGTCATGGCCATAGATGCACTTAACCAAACAATT
CTTGCTTCTGGAAAAGCACCAGGCATAGGACAGGAACATGTTCTTTATAAG
     Intron 6-7214,785214,888104 
    gtacattttttaaatcggtagcttt..........acctttttgcaattcttgtctacag
    7OMERI03G00350.1.exon8214,889215,02202134 
    TTTAGCATGGTTTCCCATCACGAAGCTCGGAATATACAACTTCCTCTGGATACTAAAACT
GTCAGGGACATATGTATCTTACCTAGTGGCTCTGCTATTTTTACATCACTGGGCAGGAAA
CTATCATCATTTAG
     Intron 7-8215,023215,10179 
    gtttgtcttcaatttagtagcctgt..........acactgcacaatattcttaatccag
    8OMERI03G00350.1.exon9215,102215,1412040 
    CATGACGGCTGACCGTGTCGTTCTTCAGTGTGATTTGCCG
     Intron 8-9215,142215,451310 
    gtaattatttaaccctgctatcctt..........ctttctctattacaataccatgcag
    9OMERI03G00350.1.exon10215,452215,5110060 
    TATCCTGGCTGGTCATGTTGTGCGGATGAATCTTCGCGTCAGATTTGTGCTGGATTGCAG
     Intron 9-10215,512215,59584 
    gttaatcttttagtatctcctgatc..........tgaaccgctttcttatgtactgcag
    10OMERI03G00350.1.exon11215,596215,77702182 
    AATGGCAATCTTATCATCTTTGATATCCGTCAAACCTCAAGACCGTTGCATTCTATGGTG
GGTTTATCTACAACACCGGTTCATACTCTCCATACGGTCATTGATAACAACGGTTCTAGA
AAGTTTCTCTCTGCCTCTTCTATAGGCCCCTGCATGTGGGATACTGATGGTAATCAAGGC
AG
     Intron 10-11215,778215,956179 
    gtacgcaaaaaagtactaacagttt..........tgtttgcctttgggctcggttgcag
    11OMERI03G00350.2.exon12215,957217,0682-1,112 
    GCCAAAGTTGCTATTGGGGACAGATAATCAACGGGTGTGCATTTCTCTTGCATGTGCCCC
TTCATCAAGTGATCTTTTGGTAGCTTCCTTTCGGCCAAAGGTTGAAACGTCCGAGGATGC
TACAGCATCTCAAGTGTATCTATCACAAACACCAACACCCTCTGGTGGAGGCAAATTAGG
GTATCATTCCCTCATCAGGAGGGCGGGGAACTCTTCATCCTTCACCGAAGATAGGACATG
CAGCACACTTGTGAGCGAAATTCGCATGTCGAAATCCGCAATCATACCTTATGGAAACAA
CCAACATCTGTTTGCCTACGGAGATGAGTCGCTGCGTGGGGTCCGGACCTGGCGACTACC
TTCGTTTGAGATGCATTCTGATCTCAGCTCCCTCCAGCAACCGGTCCTGGATCTAAGGTA
TGCAGAAAGTTCATCAGGAGGGAGGTATCTCGGGTACCTGAGCACGGAAAAGTTGCAGGC
TTTCAGAATTAGGTAGCATGTCAGGAGGGAAACTTAATTTTAGGCTAGCTTTTGCTTCTT
CTTTTTTTCCCTCTGACCTTTTTGTAGCTTTGCTAAACGCTAACGAACATAAATAGTTTG
TAGATATGAAAGCTAGAAACAGGGCCTTTTGCTATGTACAGTCTTCCTGAAAGCAGAGAG
CAGTTCTGGAATGGCAACAACCATCGCCCTGTGTTCTGAAAACTGCAGTAACGTCACTGA
TATGATGTGCAACGCACCTGTCATTTACTAGCTTACTAATTCCGTGCTTGCAATGACAGT
CTGACAGTTGATGCCTGTAATAAGCAAGGTGTTGAACTAACCTACCGAGAGTCCAATACC
ATGAAAACTTTGAGATGTTTTTGGAACATGTATGCTTGCATTGCAGGTCGAAGTGAAATT
TTGGGTGACACAGCTGCACACCTCAATCCAATCGTACACAATAATTATGATGAGGGTAAT
AGTAGATACGTGTTGGTGCTCGTACTACGTGGTGCACACAACACATGAAACGATGTGAAA
CTGAAACTGAAACTGAAGATGCATGGCTCAACCACTAGCACTCGGGGTAGTTGGCGTGAT
TCCTGGAGTAGTCCTGGCAGTAGTAGTAGACC
    3' downstream sequence 
    atggacctctgctgcgcccacctcatggccgcgttctgctgcgcgctgag..........

    This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Policy and Terms of Use

    I Agree