Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 10 exons, is annotated with 28 domains and features and maps to 83 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI02G28560.361171629aa
 
Protein coding
A0A0E0CQG1 Ensembl Canonical
-OMERI02G28560.660511607aa
 
Protein coding
A0A0E0CQG4 -
-OMERI02G28560.159881586aa
 
Protein coding
A0A0E0CQF9 -
-OMERI02G28560.459221564aa
 
Protein coding
A0A0E0CQG2 -
-OMERI02G28560.55912113aa
 
Protein coding
A0A0E0CQG3 -
-OMERI02G28560.25243113aa
 
Protein coding
A0A0E0CQG3 -
-OMERI02G28560.850611277aa
 
Protein coding
A0A0E0CQG6 -
-OMERI02G28560.75045113aa
 
Protein coding
A0A0E0CQG3 -
-OMERI02G28560.938451083aa
 
Protein coding
A0A0E0CQG7 -
Markup
  • loaded
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ccgcgccgccgccgtctcgtctcgtccggcccaaacagccgagcggccca
1OMERI02G28560.1.exon130,510,66530,511,138--474
CATGGCGACACACGGTGCGCTCGCAGGAGCATCTGCGTGGGATTCGCGGCCCGGGCCGGT
GAACCCGGTGAAAATTTCTAATTCCCCCAATATATTTTTTTTCTCTCTCTCCCATTTTCC
ATTTACTGCGGGGAATCGCGCACGCTGCCTGCCTGCCCACCTCCTCCTCCCCCCATCTCC
CTCCCCTCACGTCGCAGGCCGAGCCAGGCCACGCCGCAAACCCTTCTTCCTCCGTCGCCA
CCGCCCACCGCCCACCGCCACCTCCACCTCCTCTCGCCGCCGCCGCCGCCCGACTTCCCC
GCTCGACGCCATACGCTGCTGGGCCCCACCCACCGTCGACCCCCCCTTGGTGCGCGCGCG
CTCCGGTCGGCCTGCGCCCGCCAACGGCGTCCGCGGACTGCTGCACCCGCCGCCGGCGCC
GGCGCCTCCGTAGCCCGCTGCTTACGCGGGCGCCTCGCCGCGGAGGGTGAATGA      
 Intron 1-230,511,13930,512,2071,069
gtaaatctctcgctcctcctcctcc..........aacaacagctttttttttcttctag
2OMERI02G28560.3.exon230,512,20830,513,160-0953
GTGTTGAATAAGTCGCTAGTGTTTATGGACTTCAAACCAGCAGGAGATTGTTCTTTCAGT
GCTCACGCTAGTCCTGCCTTATTTCATAGTGGATTGGCAGATCATAACATACCAAAGAAA
TGCTGATGGACCCTCCTGTTATGCAAGTAGATTGCCAATTACAGAATGATTTGGAGAAAA
CAACACCTATTATCTACAATATGACACATGCCTTGTCACATGATGATCATGGGTGGCAAG
GCTCTGATGCTCATCCTGCAAGTGAGACAGTTAGCTGCAAGCCTGTTGAAGTTAACAATT
GTTCTCGAACAAGCATATATGAGAACCTGGATGGTTCTTCTGAAAAGTCTCATGTTAACT
TGTCAGATTTACCTCAGAAGATGCATGCCGAGCCTCCAAAAGAGACGAATGGTTCTGATG
CATACTTCAATGATGTTAGATTTCAATTGAGTCTAAGCACTGAAAATGATGCCCCTCAAA
GCACGTCTGTTGACGTCAATCAACAGAGTGTTAGTAATCAGGATGCACCTCATTCTCGGG
AAGAGACGCATCCACCTGCCAATATAGTGACTGTACTTAGGCCATGCCAGTCCAATGGAG
ATGCTCAGCCTTCTCAAGACAAGGACATTACTGAAGAACAAGTCAAAGGGAAGAAGGAAG
TTGGATCTGATATGGTAAGTAATAAAGCTGGAACTGATACATTAGAATGTCATGCAGTCC
AGAAAGAATTACAGTGCACACTTCAAGATCTGTCAGAAATAGCTTGCAGCATTGATCCAG
CACGTAAAATATCTTCTCCACAGGAAGAGAATGAGACATCTGTCTCACCTAAGAACAACA
TGGATCAGCTTGTTCTTAACAACAGTTGTAATGGCAATACTCATTATAGAAGTGGTCATT
CCAATACAGGAAATGTTGGTGCAGAAGATCAGACTGTTGCACTTTGGGTAAAG       
 Intron 2-330,513,16130,515,0311,871
gtacgatttgcttatttttaactat..........atttttcccttttgtttgaaaatag
3OMERI02G28560.1.exon430,515,03230,515,33400303
TGGAGAGGAAAATGGCAAACTGGAATTCAATGCTTTAGAGTGGACTGTCCTTTATCTACT
CTAAAGGCAAAACCAACACATGGCAGGAAGAGCTATATCATTGTTTTCTTCCCCCGTACA
AGAACTTATTCTTGGGTAGACATGCTACTTGTTCGTCCAATTGAGGAATATCCTCTGCCA
CTGGTTAATGGAACTCATCGCAAATGGCGAAAGCTAGTGAAGGATCTGAGTATTCCTCGA
CGATACATCATGCAGAAACTTGCTATTTCCATGCTAAATTTTAGTGACGAGCTTCATACA
GAG                                                         
 Intron 3-430,515,33530,518,3993,065
gtctgctatttcttctatgaatcat..........gggccgtaagtgggaagagtcacag
4OMERI02G28560.8.exon430,518,40030,520,373001,974
AAAAGCGTGGAGAAGATGTCTTCCTCAAATGCAACTTGTAGTGTAGGCTCAGAGCAGGCA
AATAATTTCCAGGTTGCTGTGCACATGAAAGTGACACCAACCATGGCTGTTGAGACAACT
AGTGATAAAGTTAACGTGTCAGAGAATGCTGATCTCTGCTACCCCATGTCAACTTCCATG
GAAAACTCTAACTTAGATGCTTCTATTTGCATTGGAATTCGCTCTCATGACAATATTGCT
GAATGCCAGGATTATGCCGTACGACACACACTTTACTGTGAGAGACACATACCGAAGTTC
CTTAAACGTGCCAGAAATGGAAAAAGTCGACTCATCTCTAAAGATGTCTTTATCAATCTT
TTGAAGTGTTGCACGTCAAGGAAAGAAAAACTGTGCTTACATCAGGCATGTGAGTTTCTT
TATTGGTTCTTGAGAAACAATCTTTCTCACCAACGCCCGGGTCTTGGTAGTGACCATATG
CCCCAGATATTAGCTGAAGTGTCAAAAAATCCTGATGTTGGAGAATTTTTGTTAAAACTG
ATTTCTAGTGAGAGAGAAAAGCTTACACATGTTTGGGGCTTTGGTACAGATAGCTCTAAT
CAAATGCATTCCGAGAACCAAGATGGATCAGTGATGGTGTTACATGAAGATGGGACACAT
CCTTCACCTGGTCTGAAGTGCAAAATATGTTCTCAGGAGTTCTCTGATGATCAAGGACTT
GGATTACACTGGACAGAGGTTCACAAAAAAGAAGTACGGTGGCTTTTCAGAGGCTATTCT
TGTGCTGTATGCATGGACTCATTTACCAACAGAAGAGTTCTCGAAAGGCACGTGCAGGAA
AAACATGGCGCTCAGTATCTCCAATATTCGACACTCTTACGTTGTATATCGTGCAACAGC
AACTTTTTGAACACAGATCTTTTATGGCAGCACATTGTTTCAGATCATTCTCGAGATTTC
AGCCTTCTGGATCATGTCCCTCGACGACCTAGGGGCCAATCTATCAAAAGAACAGAAAGG
GCAAGTGATGAGCTCCTTTATGATAACCATAACCTTGGAAAGGATGATGGTTCACAGAAG
TTCACCTGTAGATTATGTGGGATGATGTTTGATCTTTTGCCAGATCTTGGCCACCACCAT
CAAGTTGCTCATACAAACTCAGGTACAGTCTGTGATATCCCTTCAGGACGTGAAAAGTAT
CAGTTTAACCGTGGTCGGCACTATTATTCAGCCTTCAAGAAAAGTTTAAGACCATCCGGC
TCATTGAAGAAGAGGACTAGTTCTGGAGTTGAGAAACATTTTAAGGCTCAAAGCTTGGAT
CTATCTATGGATACATCACACATTGTGGAATCTGAGACCACCACCCTTGGTAGGTTACTG
GATTTCCAATGCTCAGACGTGGCATTGACTTTATTTTCAAAGATTCAAAAGACAAGACCC
CACCCAAGCAACCTTGATATTCTGTCTATTGCCCGTTCTGTTTGCTGTAAGACAAGCCTT
TGTGCTGCATTGGAAGCTAAATATGGAATCTTGCCTGATAACATATTTGTGAAAGCTGCA
AAGCTTTGTAGTGATGTTGGCATCCAAATTGATTGGCATCAAGAAGAATTCTTTTGCCCT
AAAGGTTGCAAGTCCAGGTCTAGTTCTAATTCCTTGCTCCCTTTACAGCCTACCCAAGTT
GATTTTGTGATGAGTCCTCCAATTGGTGATGAGATATGGGGCATGGATGAATATCACTAT
GTTCTTGATTCAGAGCACTTTGGTTGGAATCTTAAGAATGAGATGGTTGTTGTTTGTGAA
GATGTTAGCTTTGGCAGGGAGAAAGTTCCAGTTGTCTGTGTCATTGATGTAGATGCAAAA
GAATTTCCAGATATGAAACCTGGAGAAATTTTGCAAAGTGAAAATTCTTTGCCTTGGCAA
GGTTTCCACTACATCACAAAGCGTTTGATGGATTCATCTCTTGTTGATTCAGAG      
 Intron 4-530,520,37430,520,520147
gtatttactggattttgcttttatg..........ctcctaataagttgcttacctgcag
5OMERI02G28560.1.exon830,520,52130,520,68200162
AACACTATGGTTGGGTGTGCTTGTTCTCATGCCCATTGCACTCCTGAGGAATGTGATCAT
GTGAACCTCTTTGATAGTATCTATGAGAACCTAGTGGATCTCCATGGTCTACCTATGCGT
GGTAGATTTGCATATGATGAAAATAGCAAAGTTATTTTGCAG                  
 Intron 5-630,520,68330,521,9911,309
gtaataattgttactggcgttttta..........tgtctacgtgttgttaaatttgcag
6OMERI02G28560.1.exon930,521,99230,522,10800117
GAAGGATATCCTATATATGAGTGCAATTCATCATGCACTTGTGATGCCTCCTGTCAGAAT
AAAGTACTGCAGAGAGGACTGCTGGTAAAGTTGGAAGTCTTCAGAACTGAGAATAAG   
 Intron 6-730,522,10930,522,217109
gtgaaatattctccacttggttttt..........tattttattttgtcaaatgctgcag
7OMERI02G28560.1.exon1030,522,21830,522,32702110
GGTTGGGCTGTTAGAGCCGCAGAACCTATTCCACAGGGCACATTTGTATGTGAGTACATT
GGAGAGGTTTTGAAGGTGAAGGATGATGGGGCCATAAGACATGTAGAAAG          
 Intron 7-830,522,32830,522,582255
gtttgatgattctcttgttatttct..........tgataagaaaattattggacctcag
8OMERI02G28560.4.exon1130,522,58330,522,72022138
GGAGGCAAAAAGTGGTAGCAGCTACTTGTTTGAAATCACTTCTCAGATTGACAGGGAAAG
AGTTCAGACTACAGGGACTACTGCATACGTGATAGATGCCACAAGATATGGCAACGTATC
CCGTTTTATTAATCATAG                                          
 Intron 8-930,522,72130,522,890170
gtaactggactatattatgtctgtc..........aatgcttttgtccccttcattgcag
9OMERI02G28560.1.exon1330,522,89130,522,9782088
CTGTTCCCCAAATCTCAGTACGCGTTTAGTTTCGGTGGAGAGCAAAGACTGTCAGCTTGC
TCACATTGGTTTGTTTGCAAACCAGGAT                                
 Intron 9-1030,522,97930,523,05173
gtaagaattttttggcaacctcttc..........taattgttgtttcactgttgtccag
10OMERI02G28560.1.exon1430,523,05230,523,7930-742
ATCTTGATGGGAGAAGAATTGGCCTATGACTATGGACAAAAATTGCTACCTGGTGATGGA
TGCCCCTGCCATTGTGGTGCTCAGAATTGCCGAGGACGTGTGTATTGAGTTTGCAGTGGG
GCAGAAAATGGTAACGGAGCAGTCCAATCCTTAGCATATATCCAGAAGTTCCTACAATGG
CGTCACTTAGCAAGGGATAGCAATGTTTTTTTCTAGAGCAACAATGCAGTGCTAGAATCT
AATTCCCCATGCAATCATTAGGAATCATCATATAGGTCTCTCAACAGTTATTAGGCACAC
CATACGATTGATTTTAGTGTGGCACACTTATGCTTAACTGATCATTTGTTAGGAGCAACC
TGAAATGAAAGCAGTTCAGGCTGCATTGTTCGTAGGCCAGAAGTGAAGTGTCGTTGTAAC
ATACCTTCATTCAATTTTTACTGCTCATAAGCGCCATCGTCGAAGTTGAACCATAAGAGT
TCTGTTTGTGTTGCAGTGCATGTTTGATGTGTTGTAGGAATTTGTTAATGCATTTTATTA
TGGAAACAAAAAAGATGGAAACAAAGGAAAGCTGACTTTACTACTGGAAGTCGAAGTAGT
TGTCGAAAACTTAGTACGATGAACCGATGGAAACAAAAAAGTCGGAAGTAGTCAGTTTAT
TTTCTCGTTAAAATGTGATGGTATGAACTGGGCTGATGACGTGAATTTGATCAATCAGAA
AGTGGTCGTAAACACCTTGTGG                                      
3' downstream sequence
catttatttgttcaacatgtttttgaactaattaagtgcttcgttgacgg..........