Oryza meridionalis (Oryza_meridionalis_v1.3) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 2: 27,070,153-27,077,482 forward strand.
This transcript has 8 exons and is annotated with 41 domains and features.
This transcript is a product of gene OMERI02G24880 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........ccacagcagcaccggccccgatcgaaacgctaggccggtcggccgccctc
| ||||||
| 1 | OMERI02G24880.3.exon1 | 27,070,153 | 27,072,039 | - | 0 | 1,887 |
CGAAACGGCGCGAGCTACGTTAACTCCCCTGTCGCGGGGAATGAAAATTACCGCCATGTG GACCCCCCCACTGACAGCCGGGCCCCACAGCGCCAGCTACATCCATCGGGTCAAGGAGGC CCAGGACGTTTTCACGCATGGCCTTTGCCTCCGGCTTCGCCAGTTTACCGGGCAGCGAGC AGTAACCGGCGGTAACAGCACCGGCCGCCACCACACCATTGGCACGGACAAGCGACAATT ACCGCGATAATAACACCGACGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCCGCACCA ACCACCCTTAAGTAAGACGAGCGGAGGCGGGCCGCGGGCGAGGGAAAGGAGGAAGCCACG GGTCGCTCGTGGTAGTGGTGGTGGATCTGACGCCCACTTCGCTACGACTTCACCCATCCC TTCCTCCCTCCCTCCTCCAGTCCTCTTCTCTTCTCCCCTCCTCCCACACCTCTCCCCTAC CTCGTCTCGTCGTGCTCTTCGCACCCGCGCGATTCCGCCCCCCGAGCGCCGGCCTCCGCT TCGATCTCCGCGACGGGGCCCAATGCCAGCGGCGCGATGAGCGTGGAGGAGGAGGTGGTG GGGGAGGAGGAGGAGGAGGAGCTGTTCTACGAGTCGCTCGATCGCATCCTCTCCTCGTCG GGCTCCTCCACCTCGGCCTCGGACGACGATGGGGACCACCCGCGCCGCCGCCGCGGGTAC GACGCGGGGGCGGCGGCCGCGGCCGCGGCGCTCGACCTGTGGACCTCCGAGCCGGCGCCC ATCCAGGAGCGACGGCGCCGGCTGCTCCAGCTGATGGGCCTCTCCGGTGACCCGTCGCTC GCGCGGTTCGAGAGGGGCCGATCGGCTCCATGCGACGCCGTGGGCCCGCTGCCGTCCTCT CCGGTGGCGCGGTCCAGATCGAGCGGCGCCACGCCGGCATCCGCCGCGAAACCCCCGCTC GGAGGAGGGCGCTTGCGCGGAGCCTCGTCCGATGTGTCAGATGCTACGTTGGAGGCTGTT GAGGAGGACCCCAGGTGCTTGATCAGAAACCTCGACGACGGCAGCGAGTTCCTGGTGAGA GAGGAGTTCGGTCTCCGTGAGGTCGGTACGGGGCGGCAGCTCACCATGGAGGAGTTCGAG TTGTTCATCGGCCGCTCCCCCATCGTCCAAGAGCTCATGCGCCGCCAGAGCGTGGTCAAT TCCAACTCAAACTCCAATTCCCAAAGTGGCGCCTCCACTCCCATTGAGAGGTCCAGCTCC GGCTCCAGCAATGGTGGGGCGCGCTACAAGCGGCGCAACAGCTGGCTCCGCAGCCTCCGC AGTGCAGCTGGCTCCATGGTTACATACACTCGTGACCGCCGCAGCAGTGACGAGAAGGAT ACATCCTCAGATAAGGGTGGGCATCGCTCCAGCTCGGCTACGGATGACAGCCAAGATGGT GTTGCACACCATGGCCCGGACCGTGTTAAGGTTCGGCAGTATGGTAAATCCTATAAGGAG CTCAGTGGCTTGTTCATGAACCAGGATATAAAGGCGCACAGTGGTTCCATTTGGAGCATC AAGTTTAGTCCTGATGGGCACTTTCTCGCAAGTGCTGGTGAGGATTGTGTCATCCATGTC TGGGAGGTGTTGGAGTGGAAGATGATAGAGGAGAGGGGGTTGGAAGAAAATGGGGTCTTT GATCCAGAGTCGATGTTGGTATCCACGGCTACAGAGGGAAGCCATCGGGAGAAGAAGCTG CGGGCAAAGGCAGTACACAATCAGAGATCAGTAAGCTCAGACCGGTTGATGGTGCCAGAG CATGTGTTTGCACTATCAGAGAAGCCCGTGATAACCTTTGCAGGGCATTCTGAGGATGTG CTTGACCTTAGCTGGTCCAAATCTCAG |
| Intron 1-2 | 27,072,040 | 27,073,988 | 1,949 |
gtaacaatcaaaatgctgctatatg..........tctccacttttcaatttctgtgcag
| |||
| 2 | OMERI02G24880.3.exon2 | 27,073,989 | 27,074,079 | 0 | 1 | 91 |
TACTTGCTTTCATCTTCAATGGATAAAACTGTACGGTTGTGGCACGTGTCAAGCACTTAC TGTTTGAAAACCTTCTCCCACAGTGACTATG |
| Intron 2-3 | 27,074,080 | 27,074,161 | 82 |
gtaagagcatcgctttcaatagatc..........ctctcatatcaatttcttgattcag
| |||
| 3 | OMERI02G24880.3.exon3 | 27,074,162 | 27,074,319 | 1 | 0 | 158 |
TGACTTGCATCCAGTTCAATCCTGTTAATGATAAATACTTCATTAGTGGTTCCCTGGATA AAAAGGTTCGAATTTGGAGTATACAAGAACGCAAAATTGTTGACTGGATTGATCTGCATG AAATGATCACAGCTGCCTGTTATACCCCTGATGGACAG |
| Intron 3-4 | 27,074,320 | 27,074,413 | 94 |
gtttaacttgcttcttgttctacaa..........accttgttttttactctttgtgaag
| |||
| 4 | OMERI02G24880.3.exon4 | 27,074,414 | 27,074,465 | 0 | 1 | 52 |
GGTGCACTCGTTGGCTCCCACAAGGGCAAGTGCCATGTCTATGATATTTCTG
|
| Intron 4-5 | 27,074,466 | 27,074,896 | 431 |
gtaaccctcctctctcattacttaa..........ttttatttttgtctttttgtcttag
| |||
| 5 | OMERI02G24880.3.exon5 | 27,074,897 | 27,074,979 | 1 | 0 | 83 |
ATAATATGCTTAAGCACAAGAAACAGATTGATCTACATATTAAGAAAAGGAAATCTAGCC AGAAGAAAATCACAGGAATTCAG |
| Intron 5-6 | 27,074,980 | 27,075,086 | 107 |
gtgcttactctgaagaagcatttca..........tacttattagtcgttcttcaaatag
| |||
| 6 | OMERI02G24880.3.exon6 | 27,075,087 | 27,075,180 | 0 | 1 | 94 |
TTTGTTCCAGGGAGTTCTTCAAAGGTCATCATCACATCTGCAGATTCACGAATTCGAGTT ATTGACAGTTTTGAACTAGTTTGCAAATTTAAAG |
| Intron 6-7 | 27,075,181 | 27,075,290 | 110 |
gtaattagtgttgatcttattaatc..........atgtttgtaactcatcttgtttcag
| |||
| 7 | OMERI02G24880.3.exon7 | 27,075,291 | 27,075,808 | 1 | 0 | 518 |
GTTTTCGTAACACCAACAGCCAAATTTCTGCTTGTTCAGCTGTGAAAGGGAGATATCTTA TCTCTGCAAGTGAGGATTCCCATGTATATATGTGGAGATGTAATGATGATTCCGAGCCAA ACACAAAGAAGGGCATTGTTTCTATCACAAATACCCATGAACACTTCCACTGCGAGGGTG TGACAGTTGCTGTTTCTTGGCCTTGTGCCAGCAGCACAATGACTTCTAGAGAATGGCCTG AGAATGGCCTGTCTGGATCTGAGCTTGATAAAGATCAGGAGATGCCTGATGCTCAGCACC AGAGCAACATCATCAGAAACACCAACCCAAATCATAATGGTGATACATCTGCGACTTGGT CTGAAGAACTCATGACACCAACAAAACAGAGCCCGCGGTCTAGTGCCAGCCATCCTATGG ATGGAGATCAAGCTCCGAGTCATTCGGCCTGGGGCTTGGTGATTGTCACAGCAGGCCATG AGGGTCATATCAGAACATTTCAGAACTTCGGCTTTCCC |
| Intron 7-8 | 27,075,809 | 27,077,452 | 1,644 |
gttagagtatagcatatggacctgg..........tttatttttttccttgatgttttag
| |||
| 8 | OMERI02G24880.3.exon8 | 27,077,453 | 27,077,482 | 0 | 0 | 30 |
CCAAACAATGATGGGATATCATCAATTTGA
|
| 3' downstream sequence |
tgatcaaacttccaatggggacggtgtcggacggggccaggtggccaacc..........
|
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Ensembl Plants release 62 - September 2025 © EMBL-EBI EMBL-EBI
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