Oryza meridionalis (Oryza_meridionalis_v1.3) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Chromosome 1: 35,281,540-35,296,672 reverse strand.
This transcript has 8 exons and is annotated with 7 domains and features.
This transcript is a product of gene OMERI01G34740 Show transcript tableHide transcript table
.
| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........gccaaaaggagatcccccaaatccgccaccgcgctcacgccggcgcagcc
| ||||||
| 1 | OMERI01G34740.2.exon1 | 35,296,672 | 35,296,638 | 0 | 2 | 35 |
ATGGCGACCTCCTTCTCTTTCGGCTCTTCCGCCGC
|
| Intron 1-2 | 35,296,637 | 35,294,608 | 2,030 |
gtcgggatccaccggctcctcccca..........tggcctccctgttcgtttggtgcag
| |||
| 2 | OMERI01G34740.1.exon3 | 35,294,607 | 35,294,526 | 2 | 0 | 82 |
TCCTACAACTACTGCTATCACTCCAGTAGCATCACAGGCACCTAAGCTACCATCAGAAAT TGTTGGGAAAAATGTTGAGCAG |
| Intron 2-3 | 35,294,525 | 35,294,387 | 139 |
gtactgcacctattctttgcggtta..........accgacgaacttatctatattgtag
| |||
| 3 | OMERI01G34740.1.exon4 | 35,294,386 | 35,294,264 | 0 | 0 | 123 |
ATTATTAGGGACTGGAATAATGAACTTCAAGATCGCACTGCGAAGTTCCGGAAGCATGCC ACTGCAATATCTGAATGGGACAGGAGAATTCTGCAGAACAGGAATGTTCTTATAAGGCTT GAG |
| Intron 3-4 | 35,294,263 | 35,293,215 | 1,049 |
gtatgttcttatttttacactttac..........aaaataaattttatgtcccttgcag
| |||
| 4 | OMERI01G34740.1.exon5 | 35,293,214 | 35,293,137 | 0 | 0 | 78 |
GCTGAGGTGGCTAAAGTTGTTGAAACACAAACAAGCTTGGAGAGGCAACTTGAGTTAATA GAAACTCACCAGAAAGAG |
| Intron 4-5 | 35,293,136 | 35,291,511 | 1,626 |
gtgggtatggatgcatatatttcat..........tgaacaactcgttatataattgcag
| |||
| 5 | OMERI01G34740.1.exon6 | 35,291,510 | 35,291,407 | 0 | 2 | 104 |
GTTGACAAGGCTCTGCAGAGCATGGAGGAGGAAGCAGAGCGGGTATTCCAGGATGAACGG CTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAAT |
| Intron 5-6 | 35,291,406 | 35,290,505 | 902 |
gttagtcaccatttggattcagcta..........aacagaataattttgcaatgccaag
| |||
| 6 | OMERI01G34740.1.exon7 | 35,290,504 | 35,290,417 | 2 | 0 | 88 |
GTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTC CATCATTCAGACATTGAATGCTACTCAG |
| Intron 6-7 | 35,290,416 | 35,290,347 | 70 |
gtaagtattctggttgcagtacttg..........tagacatcagcctcctccaatgcag
| |||
| 7 | OMERI01G34740.1.exon8 | 35,290,346 | 35,290,248 | 0 | 0 | 99 |
GGTGCTGAGTTTGAGACTGCTGATAGTATGACACCATTTGATGTTGCTGTCCGGATACTG GATAATCAACTGCGTTCTTTAATGTGGATTGATGAGAAG |
| Intron 7-8 | 35,290,247 | 35,289,724 | 524 |
gtcggtaactcaagtataccacttt..........ttgaccctttgtccatttttcatag
| |||
| 8 | OMERI01G34740.1.exon9 | 35,289,723 | 35,281,540 | 0 | - | 8,184 |
GCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGT GACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCA TCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGC AAAAGTTTCACTGTTCCTCTCATTCAAGTACATGATGTACCGAACTGATGTTATTCGTTG GGATTTTAACTGCTGATATTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAA TCAGTGAACTGTTTCAACTCACTTTGGTCTTTGGACGAGGAAACAAGAGGCTTTGCGAGA TACTGTTTATTATTGGTTCCAGGTGTGTTCAGATCTGTTGAGCTGAAAAGTAGCTGTTAT ATGATGCGTTGGGTGGGCTAAGTACCTGGCTACCTGCATCAATTGAGCTACGCCCTATGA GCTTCTTACCAAGGACCAGCGGATATCTTGAGCCTTTTCTTGCGATCGTGTAATCTCAAA TCGCTGTCCTCCAGTTGCACTAGAAAGCTTCGGGGTCGTGTAAGATTGCACTATTTGCCT TTCTAAACTACATGCTATATGTTCGCCTAACTATTTGTGCATGGCGCGTGTTCATGATCT GCCATTATCAGATCAAGATTGCGCCTATACAAGAAAGATACTATAATTCTTTACCTCAAA CTCATAGCTTGGTACATGTAGCCTGTCAGACAGCGAAAGTTATCGGAAAACTAGGCATAT GCTCCACATGGTTGAGGCGTATCTTAGCATCGCCAACAATTCCGTTGCAAATAGAAGTAA GCACTAAGCATAGTTCTTTAGATCATCAGTTGATGTTCTTTTCCGCTTGGGATTCCATTC AACGGCAAGTGGCATTACCATGTGCAAGATGGGACTCGAGCAGAGGTAAGTATTGTACTA TACCATATACACTTCAAACTTAAGAATACAGGGATCAAATCAAACAAAAACTATCATCAA CGGCCAGTTGCTGTCAGATTAAAACATCTGTATGCCGTGAAGTCGAAAGCACATGCTCCC CCAGTTAGCACCTCGCTCCCTCCTCATGGATGGTTGGAAGGAACACAGATACCAGCAAAA GGAAATCTGGAAAGAGAAACCTGTCAATAGAAGCACATGCCCCCTCCATGTGAAGGCTGA TGCCCGAGGGAGTGAGGGATTAGAGAGAGAATCCACCTCCCCTCCCATTTGCAACGGCTT GGGGAGAGCCTAGGAGTCCCACATGGGCGAATTAAAGCAAAATCTTCTCTCTAACCAAAG TCCGTATCGATGCTGTGAAGCACAAGCCAACAATAATTCATCCATGTATTGTACTACTAC TAGTACCAGTACAAGTAGTGGAGTCTAATCCTTATAAAGTTAGCCTCACCCGCCGGTGTA TCAGTATGCTGGTGTGATAAGATGGGCTGCTAATCAGGGCCGTCTGCTGCGTGACACGCT GTGTCAACTATGCAAAGCCAGTGTAGCCAGTAGTGGTAGCCTCCATCTTTAGAACTCTTG ATGAGCATTTGAGCCTCACAAGCAAGTTTCAGAGTGCGAGTCATTATAGCTTGCGCCGAC CCGCGCCGCACCCGCATCACAACCCCACTCGACCACCATTCATTACTACGAGCACATCTT TTTTTTTGCTCCATATCTTTCTGCCTTGCTTTGTGGTCCTTTCAAAGAAGCCCATAAAAT TTCTCAAGAAACTTTAATCGCTTGGCGCAAAGGTAACACATACGGAAGAGAAGAAAAAAA AAAGCGAGCAATCGCTCTACATTTACAATAAGAACATCCAAAGCGGAACGCAATAAACAA AGGCCTCCGTGTTTTGCCTTTAGCTAGCTAGCACGAGGAATCGCCGATTACAATTGCTCA CGCTAGACAACATGGACCAAGCTCCATCCAGGTAGAAAACAAATAACCCTATAGTGATAT GCTACATCATATCATATGAAAATGTGACATGAGCTGAAAATCTTTATAAGCCATGACGAC CATCACATATATATCGCCAGAGGGAGGGGCAAGCCAAACAAACACAAGGACACCATTGAG GATCGGGGGAAAGCAACGCGGCAGCGGACGGCCCGGGGCAAGATCGTAGGGACCCATGCC CTCTTCTTCTACCATTTTGGTGTGACACCCTAGCACAGGAGGAGAGGCTTTGTATATTAC AAGGCGACCAAAACCTAAGCAACACTGAATTTTTGCAGCCGTGCCGGCCAGGAGAGCGAG GTTCCTTGCTCCGGGCTCGGCGGTGCACGTTGTCACGGTCCGCCGCGGCGGCGGCGGTGG TGCGGAACGGGCGCGCGCTAGTGGTGCGGCAATGGCACCGGCGACTGCGCCAACGCCGGG GCGGGCTTGGGGCACTGGTAGCACTTGGCGAAGAGCCCGAACGTGTCGATCTGCCTGATG AAGTTGACCATGCTGGCCCAGCCGCCGAGCCCGAAGCCCACCACGAGCACCCACACCACG ATGAACATGTTGAGCACGAACATCCCCGTCCAGCTCGGCAGGAAGAACGGTGGCTTCTCC GCCGCGTTCTGTTGCAAACAACAACGACAACATAAACCCTCGTCAAAAAAGAGATGCGTA TTGTAGATTCTCAACATAAAACATGGTTGGTGCTTGCTGGTTTGATTCGCCGTGCCGCGT CCGTACTACCACGCACGTTCGGTCGATCGCCTTTCGGAAAGGCGCGGAAAAAGGAAGGGG ATCGAGAGGGAAAGGCTACCCACGCACAAAAATCTCCCAAACCCCTCCCCCCACGCGCGA AAAAAGCTAAGCTAGCCGCGCGCGCCCCCCTGACCTGACGGGCGCGACGGCGACCACCGC GCCATCGCCTCCGGCTACGCGCCAAGCGGAAGTCTCACGTCTTCCAGACTTCCATCCCAT GTCCCACCCGCGACAGCAGCGCCGGCGCGAAGTGAAAAACATCAGCAGCGCGTCCGTCCC ACCTCATCCACCGCGGCGTCAACCGTTGCTTTCCGCGCGTTTCTTCGCGTCGTCGCGCAC GGTGCACAGAGAGTCTACGGGTGGATTCGTCCGCTGTACCGAGCCGCGCGGCAGCAGCCA GCCAGATAAGCAGGGACCACCTTTGGTTGGGCTCCTAATCTGAGACACTATACATGGGAG CAGTAGCGCACCAGAACTGGGCACGGTCACTAAACCAAAGTGACTAGGCTAAGCTAACCT CTCTTGGGGAAGATTCTGCCAAAGCAGCGGCCAGAATCGAGAAGGGGGGGGCCTGCTTGG AATTAATGTGGTTGTTGGCTGGATTCAATGATTGGGGATTTGCCCATTGTATGAGGTGGG CCCCGGGCACGGCCCGGCTGTGCTTTTGCATTCAACACGAACTGCTGCTTGCTTCTGCTG CCTGCGCACAGATCTCCACTGTCTATTCTATTGCCTGTGTTCCAGTCTCGCCACTGTTGA TGATGGCTCGACCGATCCGCTGCTCAGCTATAGCAACACGGAGGAAGCGTCGATGAAATC CATCGAACCCAGTTGTTAGTATAAGTTGGCCGTCACGTTGCATTCGCCCTAGCTTGCACT AGTACCTGCCATTGAATGCGTGGATGGATGGACGAGGCGGTGTACCGGAACAAAAACATG CATGCAGCGATGATGATGGGGCATAGTTAGGGCATGTGCAGAGAAGTTCTTGAGGTTACC ATGCGCGCGGAGGCCGTACGGTAGGTGAGGATGTGGGCGAGTGCCGGGATGATGTAGACG GTGAAGCTGACGAGGAGCGCGCCGACGGCGGAGTTGATGGGGCCGAAGAAGGGGAAGATG ATGGCGAGGAACCAGATGGGGACGACGATGGGGAGCCGCGCGAGCGCCCTGAGGCAGATG CTCTTGGTGTCGTGCATGCCGATCACCTTCTCCCACACGAAGTAGAGCGGCGTGCACGCG AACCCGAACGTGATGAACTGGTGGATCAGCATCAGTATCACCGCCGCGTCGCGCCACGCG GTCTTGGGCAGCAGCGAGAAGGCGTTGGAGTGGGTCAGCAGCTCGTCCCCGAACGCCCAG TACATGGCCGACGCCGACGGCAGCGTCAGCGTGAACACGTACAGCGTCGCCAGCAGGTAG ATGTACTTGAACTTGGCCGGTTTCCACATCGCGTGCATGATCTCCCTGCGCCAACCCAAA ACAGCCACCCCCCCAATCAGTCATATTTTCTTTTCTTGCAGGTTATAAATCAACAAATCA ACGGACAAAACGGCCTCGGCACATGCGGGTCAATGATGCTGAGACTTTAATCAGCTTGAT CAAATGATACGGCCAAAAAGTAGGACTACTACAACTACTGCTGCTTCTCCTAGTCACGCA GGCAGGATACATGCAAGGATCGCGGCGGCAGGGGGAATCTCGCAATTGCTTTCTATCTTT CACCAACACATGTATCCTCCACCGGTCAAATGATGGAGGAGCCGACAAATACGGACAAAT AAGGCCGTTGCCAATAATAATTTATACCACTAAATACGAGTACTAATCACCTAAAAACTC TGCTCCACAGCTAGCGAAGATCCCATCCCATGCATGTTATGCTAATGGTCTCATGTCGCT ACCAAACTGGGCTTTGAATTAGCCTGAGACCAGAAGTGGTGACGGGCATTGTCAAGATGG ACAAAGACACTCACATTCTTCAAATGGGAAGCAATTCTCAAAGCAGGTCTGTGTCCCCTT CGCCCCACTAAGCTAAACTTTCCCATGCAAGCCTAGCAGCATAATAGTAGTAGTAAGATA AATGGAATCCTCATTGGATGATTTGGCACCAAGATGTCCCAATCCATGATGGAAATCATT TCACCCCGTTGGATTAGGGCAACTAGCACGGAATTGCATAGCTTGATGGGAACTCCGCAC TAGCTGAATTGAATGAAGCTGGCCCCCCTTATCATTCCATTCCATTTCCAACCCATCAAA AGCATTTTCAATTTTCACAACTATGGAACAAGTACTGGTAGCACTACATTAAATTTTTGA AGCTAGGAGATACTATATATACTACTATAAGATCATCAAATCTCCAATCCGAACTGCATG CGACCACTAAGGCACTAACGACCATCGCATTTTGAAGTTTGAACAACGCACTGAAACGCA AATTATTCCTCGCATGGGCCTCTAATCATGCCTAGGCAAAAACACACTCAATAATCCAAG CAATAGATTAGGCACATAAACGAGCAATGGGAATAAAGGGGGCTCAAGGAGTCTATTCTA ATGCATAGTGGCCCATTCTTTTCTCCCCTAAACCATCGCGTGTACTAGCAGGGGACCTTT TGGATGCATCACCAGTTCAGCACATCGCACATGCACATGAACGCACCGAGCTTTAGCAGC TGGATCGATCTTTATAAATTTTTATGGACCGATATCAATCGATCAGCCGACTAATGGTCG CAAGCTAACGCAGCTGTTTCCCACCGCGCACAGGCTTGGAATTTTTAAGTGCCCCTAACT ATCCATTGGGATCTGTACGCCATAGAGCTAACTAGCTGCAAAGCTACAGCTACGTGTGTT TTAATTAAGCTTTAGTAGTAGTAGTACTCACTATACTACACTGTGACCAGTGAGGTGCGA GTACCAGCACCATGGAGGGGGACCAATAGAATGGAAACCAGAACCTGATTTCCAATCGGG ACATGTCCTCCACATTGCCAGGCAAAAGCTGCAGCTAGTGAAAAGTTCTCCCTCACTTCA CTTCCTCAGGAGGATTAGCTTGTAGTACTAGTAGTAATACTACTGTAATTAACAACTGGA CAAACAGAGCAAGTTCTGCTTCGCTTACACTGTGACGGCGTGGCCGCCGAAGGTGTAGAG GATGTTGGTGGCGCCGGTGAAGTACAGCACCAGCTTGGTTGGACCGGTGTGGGTGATGCC TTCGGCCTGCGACGCAAACGATCATCAGTCACTGCAAACCCAAGCTAAATGGACATGTAG TAGACGCGATGGATGATCGAGAAAGTGACAAGGACAGTTTCCCTCCTCTTATCTCACCTG GCCGTTGAGGAGGGCGGCGATGGCGAGGTACCAAGCGGTGTAGGTGGTCATGCCGAGGCC CAGGAAGGACCAGATCCGGTAGTTGTGGAACGACGGGATGAACACCGTGGTGGCGCAGCA CGCGCCGAATATGTACGTCCACGTCCGCTTGTCCAGCCGGTCGTTGATGTAGTAGATGTT ACTGAAGAAAACACCAGCAAACAATCGCTCAGGTTTTCAGCTCATCCGCACAAACCCAAT CTGTCACCACGACACACTGTTGCGCAGCAGCACGGCTACATATTTACACTGGCGCTGCGA AGTGACAGTGGGAGAGTGATGGTTGGTTGAGTTGGAGAGGAAAGGAATTTGACCTCGCGC AGGCGATCAGCTGGATGACGGAGCCGAAGAGGAGGAACGTGCAGTTGAAGGCGAGTCCGG CCGCCTTCCAGTACGGGCCCAGTAGCCCATCCAGCACCTCGAACCACTGCCACCAGTCAA CGTCACAAGCTTCTCCCATTAGCCCCAGTTGTTAGTATAGTAACTATAGTTGCGTAGTTA TGCAAAATTTGCAGTAATAAGTGATTAATTGAACAAGGATTAAGGATGAGCTCGATTCAG GCTCGGCTTTCATTTCGGCAAGCAACAAGAAGAGAGCCATGGGGATGAACACATCAAACG CACGAGCTAGGGAGGAGGGGATCCAATACCCCCAGCCATTTTCACAAAAGAAAAGGAGGC ATTTTTCAAGCCAGTAAGGATCGAAAACGACCAAACGGAAGGGGAAAAAAATGCGTGCTT GAGAAAAATGTGTTTTCGATTATGCCACATAAAGACGGGGAAAAGAAGCTGTAACAATCC GTTACTGATGATGAGGAGGAGAAGAGGAAGAAGCGACAAGGCCAGCACGGCCATGGCATG ACAAGGCGGGGCGGGTACCTGGATGACGTGGTTCTTGAAGCTGACGCCTTCCTTCTCCTT GCGGGAGCGGTACTCGACGTAGAGGACGCTGATTAGGTAGGCGGTCCAGCTGCCCATGAA ACCGTAGAACAGCTGCAGCAGCACGCCCGAGAGCATCCCGAGCTGCGAGAAGGAGTACGG CAGCGTCAGGAGCACCTGCGCGACCTGCAGAAACCACCACCGGGAAATTCAGAAATTCAG TCACGCTGCCTTTCGGATTCGTCTCGATATGATTCCTTCATCGAGCGAGCTGCATGGCCG CGATGGCGGCCATGGCGGAGCAGGATGAGTTATACCTGGTTAGAGGCACAGCTGAACCAG GCGTCCCAGACGGAGCCGCCGTGCCAGAGCAGGTTCTTCATGCTGAACTTGCCGCCGCCG CCGTGGTGGTCGTCGGCGCCGTGCTCCCCGGCGCTGACGCCCATCACCCCGACCTCCTCC TCCTTGCCGTTGCCGTCAGCCACGATGGCCTCCTCCGCCTGCTCGCGCGGCACCATGCTG ACCACGCCGCCCTTCCCCGTCGTCAGCTGCGTGCGTACGTACGGACGGACGTCGGATCAA GATCCAGGACAGCACAATATGACTTAACAAAACAGAGCAGGAAACCGATCCCGCCAATAA AAAAAACAACACCACCACCAGCAGCAGCAAGAAGAAGAAGAAGGGCACCAACCTTTCGCT CTACACAAAAGATGATCTGGAGATCGCGCTCAAGGAAGCCGGGGTGAGTGATGGGAGAGC AGTAAATGCAGGGTGCCGGTGGAGAGTGATGGCTCGAATGGTATATGATATGGAATGGAA TTTACTGTGCTATCGAAGCGAGTCCCTGCACACTGTTCGTTCTCCGCTGCTAGCTAGGAG TACGAGCGTCGTGGCCGGTGCCGCCCGGGCTGCGCTGTTTAAAGGCAGAGCCGGAGTTGC AGCAGCAGCAGCAGCAGGAGGAGGATGGCCAAGATTACGGGGCTTTCTCCTTCACTTGCT CTGCTTCTTCTCAGCTATAGGTCCTCTCCTCTGCCCAGTCTTTCCTCTGTTCCTCCTTTA TGAGGGAGTAATGCGGAAGAGGGGGCTAGAAAGAGAAGCGCGGCGCTCGTAGGGCCGTAG GGGGAGGGACGGGCGAACGAGCGCTAGAGAGGGATGAGCAGGTGATGGAGAGAGAGGGGA GAAGAGGAAGATGGGGAGGGAAAT |
| 3' downstream sequence |
ggaaacgcttgcggctttataataacgaacactccgcctcggctcagcgg..........
|
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Ensembl Plants release 62 - September 2025 © EMBL-EBI EMBL-EBI
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