Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI08G04840.3

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Location

Chromosome 8: 4,611,025-4,623,854 forward strand.

About this transcript

This transcript has 22 exons, is annotated with 42 domains and features and maps to 32 oligo probes.

Gene

This transcript is a product of gene OMERI08G04840 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI08G04840.4	8193	2246aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EIP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI08G04840.1	7980	2175aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EIP0	-
-	OMERI08G04840.5	7905	2150aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EIP4	-
-	OMERI08G04840.2	7752	2099aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EIP1	-
-	OMERI08G04840.3	7482	2009aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EIP2	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	944	975	-	cd09917	-
CDD	1514	1659	-	cd10531	-
PANTHER	1781	2007	-	PTHR46655	-
Superfamily	928	985	F-box-like domain superfamily	SSF81383	IPR036047 [Display all genes with this domain]
Gene3D	435	513	GYF-like domain superfamily	3.30.1490.40	IPR035445 [Display all genes with this domain]
Superfamily	440	498	GYF-like domain superfamily	SSF55277	IPR035445 [Display all genes with this domain]
Gene3D	931	1086	Leucine-rich repeat domain superfamily	3.80.10.10	IPR032675 [Display all genes with this domain]
Pfam	1648	1780	Protein SET DOMAIN GROUP 2, C-terminal	PF19633	IPR045606 [Display all genes with this domain]
Pfam	1780	2007	Protein SET DOMAIN GROUP 2, C-terminal	PF19633	IPR045606 [Display all genes with this domain]
PROSITE profiles	1495	1637	SET domain	PS50280	IPR001214 [Display all genes with this domain]
SMART	1502	1643	SET domain	SM00317	IPR001214 [Display all genes with this domain]
Pfam	1551	1637	SET domain	PF00856	IPR001214 [Display all genes with this domain]
Gene3D	1492	1666	SET domain superfamily	2.170.270.10	IPR046341 [Display all genes with this domain]
Superfamily	1511	1660	SET domain superfamily	SSF82199	IPR046341 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	10
MobiDBLite	1	447
MobiDBLite	65	96
MobiDBLite	103	114
MobiDBLite	122	144
MobiDBLite	156	170
MobiDBLite	195	210
MobiDBLite	217	248
MobiDBLite	285	321
MobiDBLite	343	358
MobiDBLite	374	408
MobiDBLite	429	439
MobiDBLite	534	548
MobiDBLite	534	553
MobiDBLite	617	723
MobiDBLite	660	680
MobiDBLite	1252	1315
MobiDBLite	1282	1297
Seg	4	22
Seg	78	94
Seg	123	136
Seg	137	157
Seg	335	364
Seg	373	410
Seg	429	446
Seg	693	712
Seg	1264	1278
Seg	1281	1307

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