Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 20 exons, is annotated with 23 domains and features and maps to 68 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI07G21590.25328659aa
 
Protein coding
-Ensembl Canonical
-OMERI07G21590.36008369aa
 
Protein coding
A0A0E0EFL2 -
-OMERI07G21590.15759369aa
 
Protein coding
A0A0E0EFL2 -

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
Gene3D409460-3.90.70.10-
CDD426657-cd02257-
Gene3D461536-3.90.70.10-
Gene3D537658-3.90.70.10-
Superfamily419657Papain-like cysteine peptidase superfamilySSF54001IPR038765 [Display all genes with this domain]
Pfam426459Peptidase C19, ubiquitin carboxyl-terminal hydrolasePF00443IPR001394 [Display all genes with this domain]
Pfam460656Peptidase C19, ubiquitin carboxyl-terminal hydrolasePF00443IPR001394 [Display all genes with this domain]
PANTHER538658Ubiquitin carboxyl-terminal hydrolasesPTHR24006IPR050164 [Display all genes with this domain]
PROSITE profiles425659Ubiquitin specific protease domainPS50235IPR028889 [Display all genes with this domain]
PROSITE patterns426441Ubiquitin specific protease, conserved sitePS00972IPR018200 [Display all genes with this domain]
PROSITE patterns601619Ubiquitin specific protease, conserved sitePS00973IPR018200 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite117169
MobiDBLite121136
MobiDBLite137165
Seg1425
Seg2948
Seg4958
Seg121168
Seg175196
Seg342361
Seg394405
Seg586600
Ncoils5859