Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI07G12370.2

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Location

Chromosome 7: 15,579,266-15,587,190 reverse strand.

About this transcript

This transcript has 14 exons and is annotated with 35 domains and features.

Gene

This transcript is a product of gene OMERI07G12370 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI07G12370.1	3663	859aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EBQ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI07G12370.2	3603	835aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EBQ8	-
-	OMERI07G12370.3	3564	822aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0EBQ9	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	176	493	-	cd18008	-
Superfamily	589	636	-	SSF57850	-
Pfam	591	631	-	PF13923	-
SMART	172	459	Helicase superfamily 1/2, ATP-binding domain	SM00487	IPR014001 [Display all genes with this domain]
PROSITE profiles	189	453	Helicase superfamily 1/2, ATP-binding domain	PS51192	IPR014001 [Display all genes with this domain]
Pfam	675	779	Helicase, C-terminal domain-like	PF00271	IPR001650 [Display all genes with this domain]
SMART	706	779	Helicase, C-terminal domain-like	SM00490	IPR001650 [Display all genes with this domain]
Superfamily	163	458	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Superfamily	495	834	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	505	835	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Pfam	179	567	SNF2, N-terminal	PF00176	IPR000330 [Display all genes with this domain]
Gene3D	178	326	SNF2-like, N-terminal domain superfamily	3.40.50.10810	IPR038718 [Display all genes with this domain]
Gene3D	350	494	SNF2-like, N-terminal domain superfamily	3.40.50.10810	IPR038718 [Display all genes with this domain]
CDD	673	790	SNF2/RAD5-like, C-terminal helicase domain	cd18793	IPR049730 [Display all genes with this domain]
PANTHER	53	834	SNF2/RAD54 Helicase and Transcription Factor	PTHR45626	IPR050628 [Display all genes with this domain]
SMART	592	631	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	592	632	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
PROSITE patterns	607	616	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Gene3D	583	657	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	125
MobiDBLite	34	79
MobiDBLite	80	93
MobiDBLite	94	105
MobiDBLite	348	392
MobiDBLite	356	369
Phobius	1	4
Phobius	1	22
Phobius	5	16
Phobius	17	22
Phobius	23	835
Seg	25	106
Seg	111	122
Seg	142	177
Seg	219	234
Alphafold	1	835

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