Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI06G22840.1

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Location

Chromosome 6: 26,518,490-26,526,825 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 23 domains and features and maps to 37 oligo probes.

Gene

This transcript is a product of gene OMERI06G22840 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI06G22840.2	2851	590aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0E4F5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI06G22840.1	4352	125aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0E4F4	-
-	OMERI06G22840.3	2684	556aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0E4F6	-
-	OMERI06G22840.4	2656	525aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0E4F7	-
-	OMERI06G22840.5	2580	409aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0E4F8	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PROSITE profiles	1	36	-	PS50294	-
PANTHER	4	120	-	PTHR19879	-
PROSITE profiles	41	76	-	PS50294	-
Prints	18	32	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
Prints	60	74	G-protein beta WD-40 repeat	PR00320	IPR020472 [Display all genes with this domain]
SMART	1	31	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	6	31	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	6	40	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
SMART	34	73	WD40 repeat	SM00320	IPR001680 [Display all genes with this domain]
Pfam	35	73	WD40 repeat	PF00400	IPR001680 [Display all genes with this domain]
PROSITE profiles	41	82	WD40 repeat	PS50082	IPR001680 [Display all genes with this domain]
PROSITE patterns	18	32	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
PROSITE patterns	60	74	WD40 repeat, conserved site	PS00678	IPR019775 [Display all genes with this domain]
Superfamily	4	119	WD40-repeat-containing domain superfamily	SSF50978	IPR036322 [Display all genes with this domain]
Gene3D	3	122	WD40/YVTN repeat-like-containing domain superfamily	2.130.10.10	IPR015943 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
Phobius	1	5
Phobius	1	21
Phobius	6	13
Phobius	14	21
Phobius	22	125
Seg	1	12
Seg	114	125
Alphafold	1	125

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