Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI05G17410.1

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Location

Chromosome 5: 20,882,996-20,884,675 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 26 domains and features and maps to 40 oligo probes.

Gene

This transcript is a product of gene OMERI05G17410 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI05G17410.1	1680	559aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DSS4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	236	279	-	cd16534	-
Superfamily	237	284	-	SSF57850	-
PANTHER	223	401	E3 ubiquitin-protein ligase RNF5/RNF185-like	PTHR12313	IPR045103 [Display all genes with this domain]
Pfam	238	278	Zinc finger, C3HC4 RING-type	PF00097	IPR018957 [Display all genes with this domain]
SMART	238	278	Zinc finger, RING-type	SM00184	IPR001841 [Display all genes with this domain]
PROSITE profiles	238	279	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
PROSITE patterns	253	262	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Gene3D	219	292	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	1	14
MobiDBLite	1	109
MobiDBLite	44	58
MobiDBLite	78	107
MobiDBLite	174	204
MobiDBLite	399	433
MobiDBLite	405	425
MobiDBLite	513	559
Seg	1	14
Seg	17	32
Seg	44	58
Seg	88	112
Seg	139	146
Seg	148	159
Seg	193	204
Seg	427	436
Seg	523	540
Alphafold	1	559

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