Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI04G18420.3

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Location

Chromosome 4: 23,329,340-23,339,367 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 28 domains and features and maps to 62 oligo probes.

Gene

This transcript is a product of gene OMERI04G18420 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI04G18420.2	4624	884aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DH95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI04G18420.3	4540	856aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DH96	-
-	OMERI04G18420.1	4504	844aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DH94	-
-	OMERI04G18420.4	4456	828aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DH97	-
-	OMERI04G18420.5	4146	884aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DH95	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	231	838	-	PTHR10799	-
CDD	318	511	-	cd17919	-
CDD	659	789	-	cd18793	-
SMART	314	519	Helicase superfamily 1/2, ATP-binding domain	SM00487	IPR014001 [Display all genes with this domain]
PROSITE profiles	331	509	Helicase superfamily 1/2, ATP-binding domain	PS51192	IPR014001 [Display all genes with this domain]
Pfam	666	778	Helicase, C-terminal	PF00271	IPR001650 [Display all genes with this domain]
PROSITE profiles	669	831	Helicase, C-terminal	PS51194	IPR001650 [Display all genes with this domain]
SMART	695	778	Helicase, C-terminal	SM00490	IPR001650 [Display all genes with this domain]
Superfamily	311	544	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Superfamily	450	822	P-loop containing nucleoside triphosphate hydrolase	SSF52540	IPR027417 [Display all genes with this domain]
Gene3D	555	852	P-loop containing nucleoside triphosphate hydrolase	3.40.50.300	IPR027417 [Display all genes with this domain]
Pfam	321	622	SNF2, N-terminal	PF00176	IPR000330 [Display all genes with this domain]
Gene3D	289	531	SNF2-like, N-terminal domain superfamily	3.40.50.10810	IPR038718 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	19
MobiDBLite	1	52
MobiDBLite	83	253
MobiDBLite	183	210
MobiDBLite	211	249
Seg	32	43
Seg	53	67
Seg	72	76
Seg	119	131
Seg	132	146
Seg	148	166
Seg	168	201
Seg	206	230
Seg	234	247
Alphafold	1	856

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