Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI04G15310.2

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Location

Chromosome 4: 20,658,877-20,662,300 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 20 domains and features and maps to 42 oligo probes.

Gene

This transcript is a product of gene OMERI04G15310 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI04G15310.3	1740	579aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DFZ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI04G15310.2	1572	523aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DFZ6	-
-	OMERI04G15310.1	1362	453aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0DFZ5	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	94	455	-	PTHR12695	-
CDD	160	342	Ssl1-like	cd01453	IPR007198 [Display all genes with this domain]
Pfam	168	358	Ssl1-like	PF04056	IPR007198 [Display all genes with this domain]
NCBIFAM	381	455	TFIIH subunit Ssl1/p44	TIGR00622	IPR012170 [Display all genes with this domain]
TIGRFAM	381	455	TFIIH subunit Ssl1/p44	TIGR00622	IPR012170 [Display all genes with this domain]
Gene3D	158	343	von Willebrand factor A-like domain superfamily	3.40.50.410	IPR036465 [Display all genes with this domain]
Superfamily	160	326	von Willebrand factor A-like domain superfamily	SSF53300	IPR036465 [Display all genes with this domain]
SMART	162	338	von Willebrand factor, type A	SM00327	IPR002035 [Display all genes with this domain]
PROSITE profiles	164	303	von Willebrand factor, type A	PS50234	IPR002035 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	13	53
MobiDBLite	35	53
MobiDBLite	67	105
MobiDBLite	89	98
Seg	29	58
Seg	66	73
Seg	88	97
Seg	142	156
Seg	332	352
Seg	436	448
Alphafold	1	523

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