Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI03G27330.4

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Location

Chromosome 3: 28,708,681-28,719,939 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 23 domains and features and maps to 26 oligo probes.

Gene

This transcript is a product of gene OMERI03G27330 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI03G27330.2	4237	1272aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0D565	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI03G27330.3	5988	245aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0D566	-
-	OMERI03G27330.5	5763	170aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0D568	-
-	OMERI03G27330.6	4294	170aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0D568	-
-	OMERI03G27330.4	4186	1255aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0D567	-
-	OMERI03G27330.1	3777	1258aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0D564	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
PANTHER	2	699	-	PTHR37393	-
Superfamily	13	72	-	SSF57850	-
Superfamily	85	140	-	SSF49599	-
PROSITE profiles	21	60	Zinc finger, RING-type	PS50089	IPR001841 [Display all genes with this domain]
PROSITE patterns	38	47	Zinc finger, RING-type, conserved site	PS00518	IPR017907 [Display all genes with this domain]
Gene3D	6	120	Zinc finger, RING/FYVE/PHD-type	3.30.40.10	IPR013083 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	330	378
MobiDBLite	393	533
MobiDBLite	411	528
MobiDBLite	649	694
MobiDBLite	649	733
MobiDBLite	703	730
Seg	172	199
Seg	246	259
Seg	267	286
Seg	329	350
Seg	354	382
Seg	400	441
Seg	647	658
Seg	697	716
Seg	1052	1064
Seg	1152	1174
Alphafold	1	1255

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