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Oryza meridionalis (Oryza_meridionalis_v1.3)
Location
About this transcript

This transcript has 15 exons, is annotated with 38 domains and features and maps to 87 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
NameTranscript IDbpProteinBiotypeUniProtFlags
-OMERI02G32430.23539967aa
 
Protein coding
A0A0E0CS20 Ensembl Canonical
-OMERI02G32430.17059203aa
 
Protein coding
A0A0E0CS19 -
-OMERI02G32430.43284882aa
 
Protein coding
A0A0E0CS22 -
-OMERI02G32430.32963775aa
 
Protein coding
A0A0E0CS21 -

Domains

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  • Domain source
  • Start
  • End
  • Description
  • Accession
  • InterPro
Domain sourceStartEndDescriptionAccessionInterPro
CDD666962-cd00200-
PROSITE profiles837870-PS50294-
PANTHER367966E3 ubiquitin-protein ligase COP1PTHR44080IPR042755 [Display all genes with this domain]
Pfam137226Glabrous enhancer-binding protein-like, DBD domainPF04504IPR053932 [Display all genes with this domain]
SMART647691WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART702741WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART744784WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam745783WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles751783WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART785826WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART830868WD40 repeatSM00320IPR001680 [Display all genes with this domain]
Pfam833868WD40 repeatPF00400IPR001680 [Display all genes with this domain]
PROSITE profiles837877WD40 repeatPS50082IPR001680 [Display all genes with this domain]
SMART871910WD40 repeatSM00320IPR001680 [Display all genes with this domain]
SMART920964WD40 repeatSM00320IPR001680 [Display all genes with this domain]
PROSITE patterns855869WD40 repeat, conserved sitePS00678IPR019775 [Display all genes with this domain]
Superfamily664962WD40-repeat-containing domain superfamilySSF50978IPR036322 [Display all genes with this domain]
Gene3D633967WD40/YVTN repeat-like-containing domain superfamily2.130.10.10IPR015943 [Display all genes with this domain]

Other features

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  • Feature type
  • Start
  • End
Feature typeStartEnd
MobiDBLite114
MobiDBLite1134
MobiDBLite1625
MobiDBLite2637
MobiDBLite5570
MobiDBLite87101
MobiDBLite322374
MobiDBLite336347
MobiDBLite348358
Seg314
Seg1637
Seg5270
Seg85121
Seg229235
Seg325337
Seg343370
Seg926933
Alphafold1967
Ncoils184204
Ncoils431451