Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI01G20320.3

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Location

Chromosome 1: 21,645,289-21,648,936 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 18 domains and features and maps to 45 oligo probes.

Gene

This transcript is a product of gene OMERI01G20320 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI01G20320.1	4302	691aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0C4F6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI01G20320.4	4207	506aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0C4F9	-
-	OMERI01G20320.2	2705	238aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0C4F7	-
-	OMERI01G20320.3	2081	528aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0C4F8	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
SMART	9	161	-	SM00212	-
PANTHER	39	161	-	PTHR24068	-
PROSITE profiles	6	161	Ubiquitin-conjugating enzyme E2	PS50127	IPR000608 [Display all genes with this domain]
Pfam	10	155	Ubiquitin-conjugating enzyme E2	PF00179	IPR000608 [Display all genes with this domain]
CDD	10	156	Ubiquitin-conjugating enzyme E2	cd00195	IPR000608 [Display all genes with this domain]
PROSITE patterns	84	99	Ubiquitin-conjugating enzyme, active site	PS00183	IPR023313 [Display all genes with this domain]
Gene3D	1	161	Ubiquitin-conjugating enzyme/RWD-like	3.10.110.10	IPR016135 [Display all genes with this domain]
Superfamily	7	161	Ubiquitin-conjugating enzyme/RWD-like	SSF54495	IPR016135 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
MobiDBLite	211	253
MobiDBLite	430	459
MobiDBLite	432	443
MobiDBLite	472	528
MobiDBLite	481	491
MobiDBLite	517	528
Seg	37	42
Seg	417	432
Seg	509	522
Alphafold	1	528

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