Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: OMERI01G08180.4

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Location

Chromosome 1: 7,246,578-7,255,310 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 20 domains and features and maps to 30 oligo probes.

Gene

This transcript is a product of gene OMERI01G08180 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	Flags
-	OMERI01G08180.3	3122	712aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0BZE5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	OMERI01G08180.1	2975	663aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0BZE4	-
-	OMERI01G08180.2	2758	712aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0BZE5	-
-	OMERI01G08180.4	2584	654aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0E0BZE7	-

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
CDD	2	132	-	cd03561	-
Gene3D	2	138	ENTH/VHS	1.25.40.90	IPR008942 [Display all genes with this domain]
Superfamily	4	138	ENTH/VHS	SSF48464	IPR008942 [Display all genes with this domain]
PANTHER	1	178	TOM1-like protein, plant	PTHR45898	IPR044836 [Display all genes with this domain]
SMART	2	134	VHS domain	SM00288	IPR002014 [Display all genes with this domain]
Pfam	5	124	VHS domain	PF00790	IPR002014 [Display all genes with this domain]
PROSITE profiles	9	138	VHS domain	PS50179	IPR002014 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Filter

Feature type	Start	End
MobiDBLite	141	171
MobiDBLite	153	170
MobiDBLite	224	263
MobiDBLite	228	248
MobiDBLite	249	263
MobiDBLite	613	630
MobiDBLite	613	638
Seg	116	127
Seg	306	318
Seg	361	374
Seg	573	584
Seg	608	627
Alphafold	1	654

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