Oryza longistaminata (O_longistaminata_v1.0)
Location
About this transcript

This transcript has 12 exons, is annotated with 39 domains and features and maps to 49 oligo probes.

Gene
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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • Flags
NameTranscript IDbpProteinBiotypeFlags
-KN538722.1_FGT03736001199aa
 
Protein coding
Ensembl Canonical

Protein domains for KN538722.1_FGP037.

Cleavage site (Signalp)

Signal peptide cleavage sites predicted by SignalP.

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Transmembrane helices

Transmembrane helices predicted by TMHMM.

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PIRSF

Protein domains and motifs from the PIR (Protein Information Resource) Superfamily database.

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HAMAP

HAMAP families.

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Prints

Protein fingerprints (groups of conserved motifs) from the PRINTS database.

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TIGRFAM

Protein domains and motifs from the TIGRFAM database.

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NCBIFAM

NCBIfam is a collection of protein families based on Hidden Markov Models (HMMs).

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SFLD

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AFDB-ENSP mappings

Protein features that represent the mapping between Ensembl proteins (ENSP) and AlphaFoldDB protein structures (including their corresponding chains). Imported via UniProt mappings

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Coiled-coils (Ncoils)

Coiled-coil regions predicted by Ncoils.

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MobiDB lite

Intrinsically disordered regions predicted by MobiDB lite.

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Low complexity (Seg)

Low complexity peptide sequences identified by Seg.

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Superfamily

Protein domains and motifs from the SUPERFAMILY database.

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SMART

Protein domains and motifs from the SMART database.

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Pfam

Protein domains and motifs from the Pfam database.

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PROSITE profiles

Protein domains and motifs from the PROSITE profiles database.

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PROSITE patterns

Protein domains and motifs from the PROSITE patterns database.

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PANTHER

PANTHER families.

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Gene3D

CATH/Gene3D families.

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CDD

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Statistics

Ave. residue weight: 110.793 g/mol

Charge: -12.5

Isoelectric point: 5.4853

Molecular weight: 132,841.00 g/mol

Number of residues: 1,199 aa