Oryza longistaminata (O_longistaminata_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Scaffold KN539427.1: 89,367-94,611 reverse strand.
This transcript has 7 exons, is annotated with 14 domains and features and maps to 3 oligo probes.
This transcript is a product of gene KN539427.1_FG007 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........ggcgttggacgacgcaccaaatgacaggtggggccccctgagtcccccgg
| ||||||
| 1 | KN539427.1_FG007.exon1 | 94,611 | 94,545 | 0 | 1 | 67 |
ATGCGGGGTGGGGCCCGCGCACCCGGAAGCGTTTCGTTTGGCTGCGCTGTCTTTCTGGCT GGCCCAT |
| Intron 1-2 | 94,544 | 92,361 | 2,184 |
gtgagagacggggcaccactcggtg..........ctagctggtggttcttgccttgcag
| |||
| 2 | KN539427.1_FG007.exon2 | 92,360 | 92,250 | 1 | 1 | 111 |
GGCGAGGCAGTGGTAGCCTGCGAGCTTTAGCTGCGGGAGCGGTTGGTTTTGGTAAATTGG TTGCGTGTGCGTGTGCGTGCCATGAGAAGATGATGCGCGCCAAGGCGAAAG |
| Intron 2-3 | 92,249 | 91,876 | 374 |
gtacattcccaccggcggcggcgat..........gctgatggtggtggtggtggtgcag
| |||
| 3 | KN539427.1_FG007.exon3 | 91,875 | 91,619 | 1 | 0 | 257 |
GTGAGCTGAAGAAGCAGCTGTCGGCGCCGACGGGGCTGCACCCGGAGGACCAGAAGATCG TGTACAAGGACAAGGAGAGGGACTCCAAGGCGTTCCTCGACATGGCCGGCGTCAAGGACC GCTCCAAGATGGTGCTCCTCGAGGACCCAACGGCGCAGGCCAAGCGCCTCCTCGAGCAGC GCCGCACCGACAAGGCCGAGCGCGCCGCCAAGTCCATCTCCCGCATCAGCCTCGACGTCG ACAAGCTCGCCACCAAG |
| Intron 3-4 | 91,618 | 91,533 | 86 |
gtaccacaatttgcggcggcgcggc..........gctgaattgggcggtggtgttgcag
| |||
| 4 | KN539427.1_FG007.exon4 | 91,532 | 91,443 | 0 | 0 | 90 |
GTGACGGCTCTGGAGGCCATCGTCGGCAAGGGCGGGAGGGTGGTCGACGCCGACGTGGTC ACGCTCACGGAGGCGCTGATGAACGAGCTG |
| Intron 4-5 | 91,442 | 91,314 | 129 |
gtcaatctccgtctcccgcgtcgcc..........gagctgtttggtggtgtacgtgcag
| |||
| 5 | KN539427.1_FG007.exon5 | 91,313 | 91,150 | 0 | 2 | 164 |
GTGTCGGCGCTGGAGGCGATCGTGAGCAAGGGCGGGAGGGTGGTTGACGCCGACGTGGTG GCGCTCACCGAGGCGCTGATGAACGAGCTGGTCAAGCTCGACTCCATCGCCGCCGACGGC GAGGTCAAGGAGCAGCGCCGAGTGCAGGAGAAGCGGGTGCAGAA |
| Intron 5-6 | 91,149 | 89,889 | 1,261 |
gtacgtcgaggccctcgccgccatc..........agttgttgttgttgttgttgttcag
| |||
| 6 | KN539427.1_FG007.exon6 | 89,888 | 89,833 | 2 | 1 | 56 |
AGTTCAGAATTTGTGTGCAAGGAGACAGGGGAAGCTAATAATACTGGGCTTGTGGG
|
| Intron 6-7 | 89,832 | 89,507 | 326 |
gtttgtataaagtttgatacatact..........cacaatagttgtacctgttgtgcag
| |||
| 7 | KN539427.1_FG007.exon7 | 89,506 | 89,367 | 1 | 0 | 140 |
AGGGCAGTAATTGGTGTTGTCCTCAAGTTGCAGACTTTGCAGAGATGCCTTTCTTCAGAG AAGCACAGAAAGAAAGGCAGGCTGAGTTGGAAGCTTCATGCCCAGCTATTAGAAATAGGG AGTCTAGGAGATCACAGTAG |
| 3' downstream sequence |
tagtagtagcagcagtagctcatttggtagtaggataaaaattaattact..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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