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Oryza longistaminata (O_longistaminata_v1.0)
Location
About this transcript

This transcript has 6 exons, is annotated with 10 domains and features and maps to 21 oligo probes.

Gene
Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • Flags
NameTranscript IDbpProteinBiotypeFlags
-KN539327.1_FGT013510169aa
 
Protein coding
Ensembl Canonical
Exons/ Introns
  • Translated sequence
  • Flanking sequence
  • Intron sequence
Markup
  • loading
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  • No.
  • Exon / Intron
  • Start
  • End
  • Start Phase
  • End Phase
  • Length
  • Sequence
No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
5' upstream sequence
..........ccccccaatcgccaaaaccctaactccgatccgatcgagctctgcttccc
1KN539327.1_FG013.exon166,12366,1740152
ATGGCGACCGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG        
 Intron 1-266,17566,293119
gtacggatcggaacggcccccccgt..........ccgcctttttgcgggatcgttgcag
2KN539327.1_FG013.exon266,29466,39612103
ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTCGTGGACGATAGCAACGTGT
TCGAGTGGCAAGTCACCATCATCGGCCCGCCCGATACCCTGTA                 
 Intron 2-366,39768,2121,816
gtaagttcaattcccacaccccccc..........aatgtgtgaacttctgtttctgcag
3KN539327.1_FG013.exon368,21368,3102198
TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAATAGTCCCCC
ATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATG                      
 Intron 3-468,31168,38171
gtaagcttgctattgatctatgatt..........agggtttataatgttcaattcttag
4KN539327.1_FG013.exon468,38268,48210101
TTTATCCTGATGGGCGCGTATGCATTTCTATCCTTCATCCACCTGGTGAAGATCCCAACG
GTTATGAGCTTGCGAGCGAACGGTGGACACCTGTGCATACA                   
 Intron 4-568,48369,006524
gtaggttcttttttacaatgcatac..........attattttgtgcttgtaacttgcag
5KN539327.1_FG013.exon569,00769,0840078
GTTGAAAGTATAGTTCTGAGCATCATTTCGATGCTCTCTAGTCCAAATGATGAGTCTCCA
GCAAATATTGAAGCGGCT                                          
 Intron 5-669,08569,532448
gtaagtgcactcgctgtctatctgc..........tttgaaatttgtggtgctggtgcag
6KN539327.1_FG013.exon669,53369,6100078
AAGGATTGGAGAGAAAAGAGGGACGATTTCAAGAAAAAGGTTAGACGCATTGTTCGTAAA
TCACAGGAAATGCTCTGA                                          
3' downstream sequence
aagataaggagcacaagggggagtaagcgagtgctacaacaggtgcacta..........