5' upstream sequence
..........attgtcagaagtgacaaactacatcatgctcataatttcagtatccaaac
1 KN539303.1_FG002.exon1 49,476 49,844 0 0 369
ATGGGCTGGAAAAGGAAGACACATCATGGAGGATCATGTCATCAACAACAATCCTGTCCT TCACATGGTAATGAATTGTCTGCGATAGATGAGGAGGTTTCCCATCTTACGAGGCTTAAA TCCGAGCCATGTGAGAGGACTCGTGCATCCCTTCATGCTGGAAAAAAGAGGCATATCTCA ACATTCAAGTTGTTGTCAGGGAGAGAATCCAACTGCTTAGGGATTGGTAGGTTCTCTTCA GCTGATTGCTCTTATGCTCTTCGTAAACACCTACCAGTAAAAGGCCCATGGTGTGTTGAT GACATGGACAGTGAAGCCTACATATCTCAATTCTCCGCAGATGGTTCCCTTCTCATTGGT GGGTTCCGG
Intron 1-2 49,845 49,976 132
gtatgtcgttgtgctattgtaggga..........atcctttatgccaacaattaatcag
2 KN539303.1_FG002.exon2 49,977 50,096 0 0 120
GGTAGCCATATCAGAATCTACAATGCTGAGAAAAAGTGGACGATACATAAGGACATAACC TGCAAAAAGCTACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA
Intron 2-3 50,097 51,097 1,001
gtaagactcttatgcattgttctca..........taagtgttactcgttctttttgcag
3 KN539303.1_FG002.exon3 51,098 51,175 0 0 78
GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGCATGAGAGAA TCACATGCCAATATTACG
Intron 3-4 51,176 52,142 967
gtatatcctctgatgataacaaaaa..........tattctgtttttatttataatgcag
4 KN539303.1_FG002.exon4 52,143 52,316 0 0 174
{"provisional":{"expect":[],"flourishes":{},"seq":[{"style":[1]},-1,{"style":[1,-53,0]}],"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#1044ee"]]}},"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only"}
CAAGTTCACGAAGGCTTGGAGTTTTCTAATGATGATGATGGGTTCTCCTTTGCCATATTT TCTGTTAAGTTTTCAAAAGATGGCCGAGAACTTGTTGTTGGAAACAACAATGAATCAATA TGTATTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCG
Intron 4-5 52,317 53,227 911
{"provisional":{"seq":[{"style":[1]}],"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"},"exon1":{"class":"e1","default":null,"text":"Translated sequence","label":"#1044ee"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"flourishes":{},"expect":[]},"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only"}
gtatgaaacagatgcatgactgagc..........ttttctcaacttttggtctttaaag
5 KN539303.1_FG002.exon5 53,228 53,305 0 0 78
{"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"}},"_messages":[]},"seq":[{"style":[1]},{"style":[1,-17,0]}],"flourishes":{},"expect":[]}}
GCTGATGTCAACGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATACTCTGGAAGT GATGATAGCCTCTGTAAG
Intron 5-6 53,306 53,713 408
{"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only","provisional":{"flourishes":{},"expect":[],"seq":[{"style":[1]}],"legend":{"exons/Introns":{"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"}},"_messages":[]},"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]}}}
gtgagactaatatttcccaatttca..........actgacactgttatccaatcttcag
6 KN539303.1_FG002.exon6 53,714 53,886 0 2 173
{"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only","provisional":{"flourishes":{},"expect":[],"legend":{"exons/Introns":{"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"}},"_messages":[]},"seq":[{"style":[1]},-1,{"style":[1,-52,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]}}}
GTCTGGGATAGGCGCTGCAACAAGAGAGGAAAACAAGTTGGTGTTTTGACAGGTCATTTA GATGGGATTACATTTATTGATAGCCGTGGAGATGGGCATTATTTTATTTCAAATTGCAAG GATCAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGA
Intron 6-7 53,887 54,131 245
{"provisional":{"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"}},"_messages":[]},"flourishes":{},"expect":[]},"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only"}
gtaaatacagctcttgcttttgcat..........ttttacttgtagtttgtttttgcag
7 KN539303.1_FG002.exon7 54,132 54,287 2 2 156
{"provisional":{"expect":[],"flourishes":{},"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"}},"_messages":[]},"seq":[{"style":[1]},-1,{"style":[1,-35,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]}},"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only"}
CTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCAGAAGCCCG ATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTGTTACG TACACTAATTCGTTGCTATTTTTCCCCAATACACAG
Intron 7-8 54,288 54,890 603
{"provisional":{"legend":{"exons/Introns":{"intron":{"label":"#aaaaaa","text":"Intron sequence","default":null,"class":"ei"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null}},"_messages":[]},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{}},"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only"}
gttagtttagatatgctaaataatt..........gtttctgattcttctctttttgcag
8 KN539303.1_FG002.exon8 54,891 54,902 2 2 12
{"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only","provisional":{"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"text":"Flanking sequence","label":"#008000","class":"ef","default":null}},"_messages":[]},"seq":[{"style":[1,-11,0]}],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"expect":[],"flourishes":{}}}
CACGGGTCAGAG
Intron 8-9 54,903 55,022 120
{"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only","provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"seq":[{"style":[1]}],"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"}},"_messages":[]}}}
gtatatatatacaggatccagtgac..........ttctactatttgcatactatggcag
9 KN539303.1_FG002.exon9 55,023 55,038 2 0 16
{"provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1,-15,0]}],"legend":{"exons/Introns":{"intron":{"text":"Intron sequence","label":"#aaaaaa","class":"ei","default":null},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"class":"ef","default":null,"text":"Flanking sequence","label":"#008000"}},"_messages":[]}},"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only"}
TTTTTGTGCACACAGG
Intron 9-10 55,039 55,737 699
{"provisional":{"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"exon1":{"label":"#1044ee","text":"Translated sequence","default":null,"class":"e1"},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"}},"_messages":[]},"seq":[{"style":[1]}],"ref":{"style":[[0,""],[0,"color:#aaaaaa"]]},"expect":[],"flourishes":{}},"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only"}
gtgtgtatcccatctgtgaaaactg..........tgaatcaactctctctttcttgcag
10 KN539303.1_FG002.exon10 55,738 55,950 0 0 213
{"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only","provisional":{"flourishes":{},"expect":[],"ref":{"style":[[0,""],[0,"color:#1044ee"]]},"seq":[{"style":[1]},-2,{"style":[1,-32,0]}],"legend":{"exons/Introns":{"intron":{"default":null,"class":"ei","label":"#aaaaaa","text":"Intron sequence"},"exon1":{"text":"Translated sequence","label":"#1044ee","class":"e1","default":null},"flanking":{"label":"#008000","text":"Flanking sequence","default":null,"class":"ef"}},"_messages":[]}}}
GCTACTGGAAAAATTGTTGAAAAACTCAGATGGCATGGATCAATAATCAGAGATTGTTCC TGGCACCCATACTTTCCAACGCTTGTTAGCTCTTCTTGGGATGGCTATCTAGTCCGGTGG GAAGCAACAGAGGACGACAAGGACCCCTCCATGCTCAAGACCGGAAAGCAAAGAATGCAT CCAGAGGGATACACATTTTCGTTTGTGTTTTAG
3' downstream sequence
{"url":"/Oryza_longistaminata/Component/Transcript/Exons/exons?g=KN539303.1_FG002;r=KN539303.10X0P+049476-55950;t=KN539303.1_FGT002;db=core;time=1743483880384.384;adorn=only","provisional":{"ref":{"style":[[0,""],[0,"color:#008000"]]},"legend":{"exons/Introns":{"intron":{"class":"ei","default":null,"text":"Intron sequence","label":"#aaaaaa"},"exon1":{"default":null,"class":"e1","label":"#1044ee","text":"Translated sequence"},"flanking":{"default":null,"class":"ef","label":"#008000","text":"Flanking sequence"}},"_messages":[]},"seq":[{"style":[1]}],"flourishes":{},"expect":[]}}
aaattcagcagacggcagggtcctcaatgcttggaagatgtattcacgtc..........
Oryza longistaminata (O_longistaminata_v1.0) ▼ 
Summary
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