Oryza longistaminata (O_longistaminata_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Scaffold KN538777.1: 141,167-145,806 forward strand.
This transcript has 7 exons, is annotated with 32 domains and features and maps to 25 oligo probes.
This transcript is a product of gene KN538777.1_FG017 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........tacttctctgctggcctgtgtggtgaggtgatagctagactaataggaag
| ||||||
| 1 | KN538777.1_FG017.exon1 | 141,167 | 141,841 | 0 | 0 | 675 |
ATGAAGCGCAAGCGTGGGCGTAAGATGGGCAAGAAGGGCAAGTCGAAAGCTTCCACCACA GCGGATGCTTCTCCAATGTCCCCGTCCAGCCCGAGCACCGTGGATGCTTCCTCAAAATCC CCCTCCAGCCCAAGCACAGAGGAGAACGGCACCAGCCCAGCGCATCATCAGGCAGATAAT GTGCCTGTTATTGCTCCGCCACCAGTGCCTGAACCGGCACCTCCTGAGCCGGAGAAGCCA GCCGTGTCTACTGACGTACAGAATGCTAAGCCAAAAGTCTATAGCCGAGTCAGGTTGAAG TTCAAATCTGCCAAAGTGTTGGAGACGCACCAGGGTCCTTCAGAAGCAAAAGCACCTGTT GATGGTGGTGGTGGTAAACCTGCAAGTGCTGCGCCTGAAGCGAGCAAAGAAGTTGTTGCG GAGAAGGCTATTGTATCACCAGACGGACAGAAAGATGCGCAGGCAGCAGAATTGAGTGGT TCTGATAAGGATAAGGTGGCAAGAAAAGTAGCAAGCATAAAGATCAAGTCTGTAGGATTA TCTTCGGTAGAAGATAAAAACCAGGACAGGAAAGCTGATTCAGTCAGTGAACCTCTTCCA AGCAAGCAGGAAACTGTATTGGAAAATGTAGAAAGCGAGACTGCATTGGAGCTGAGAAGC TCACAAGAGTTGGAG |
| Intron 1-2 | 141,842 | 142,017 | 176 |
gtaaagcaggctacgccagaacgtc..........ttaatttccttgatcttgctgccag
| |||
| 2 | KN538777.1_FG017.exon2 | 142,018 | 142,095 | 0 | 0 | 78 |
GCTATTAAGAAAGTCATGAAGATGGATGCAGCTGAGCCGTTCAACACACCGGTGGATCCT GTTGCTCTAGGAATACCT |
| Intron 2-3 | 142,096 | 142,710 | 615 |
gtgagtatttttatttggtatcgct..........cattgacagttagcaaaatttgcag
| |||
| 3 | KN538777.1_FG017.exon3 | 142,711 | 142,948 | 0 | 1 | 238 |
GATTATTTTGATATTATTGATACTCCTATGGATTTTGGCACAATATGTCAAAATCTAGAA CGTGGTGATAAGTATATGAACTCAGAGGATGTGTATAAGGACGTGCAATTTATATGGGAT AATTGTACCAAGTACAACAGTAAAGGTGATTACATTATAGAGCTTATGAAACGGGTGAAG AAGGGCTTCATGAAAAACTGGCTGGCAGCAGGCTTGTATTCTGATGCGCAGGAGAATG |
| Intron 3-4 | 142,949 | 143,572 | 624 |
gtaagtattgctcaattggccataa..........gtgttttatccaaacaaaaatatag
| |||
| 4 | KN538777.1_FG017.exon4 | 143,573 | 143,648 | 1 | 2 | 76 |
GTGGCAATGATAACACAGGCGATGAGGATGTCAAAGGTTCAAAAGGCAAGTCTAAGCAAA AACGGCGGCGCCTAGG |
| Intron 4-5 | 143,649 | 144,264 | 616 |
gtatgtaattgattttctgacagcc..........gataatatgatatgtttaaatacag
| |||
| 5 | KN538777.1_FG017.exon5 | 144,265 | 144,406 | 2 | 0 | 142 |
GAATGATCGACACAAAAATGACTGTGCATGTGCTGTTTGTCAAGTTACACGCCGCAAAAA GGAAAAGGATGAAATCTTGGCTGTCATTGAAAATGATACAGCTGCAGTGAATAGTAACAT TTCTGACCAGCAAATCATGGAG |
| Intron 5-6 | 144,407 | 144,879 | 473 |
gttagaattgtcatccaaatctttg..........aactaacttatgcttcacataacag
| |||
| 6 | KN538777.1_FG017.exon6 | 144,880 | 145,173 | 0 | 0 | 294 |
GTAGACTCAGGCATTAATAATGCTGGTAGTCATGACACTACCTCTAGTCAGGAGCAACCA CCACAAACTGATATGTACAGAAGAACAGCGGTAGCAGATGATTCAGGGACTCAGATAGAA AATCATGTGAAATTCTTCAACAACCAGCCACTGCCACATGATTATGAGGATGAAGGCTCC AGACCATACTTTGACGAAAAAGAAGAGGTAGACTATACAGATTTGATCAGTCAGGAGGAA CATACATCCAGTCAGCCCAATGATGGCTCCGAAGTTGCACAACACCAACATAAG |
| Intron 6-7 | 145,174 | 145,593 | 420 |
gtaattttggacagaatatcagtgc..........ttggttttatttcatttcgtcacag
| |||
| 7 | KN538777.1_FG017.exon7 | 145,594 | 145,806 | 0 | 0 | 213 |
GAGCCAACAGAAACAAGCCAGGAGATTGAAATGGAGGATTATCCCATACAGAAGGAGAAC CAATCATTCTTGCAACTCTGCGCACGGCTTTTCCCCAGCAACCAGAGCTCTGTTTTCAGG GGACGCCATTCTCTGTTCCGACAGCAACAGCGGCAGGTTTCAATGAAGGGAAGCCCTCTG CATGCGGCCATAACAGCGATAATGAAACGGTAG |
| 3' downstream sequence |
gaattttgtccctccaatggctgcttagcagcggccgtttcgtgtaaagg..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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