Oryza longistaminata (O_longistaminata_v1.0) ▼ 
Summary
SequenceProtein InformationProtein summaryDomains & featuresVariantsPDB 3D protein modelAlphaFold predicted modelGenetic VariationVariant tableVariant imagePopulation comparisonComparison imageExternal ReferencesGeneral identifiersOligo probesSupporting evidenceID HistoryTranscript historyProtein history.
Scaffold KN538761.1: 255,009-256,821 reverse strand.
This transcript has 6 exons, is annotated with 8 domains and features and maps to 31 oligo probes.
This transcript is a product of gene KN538761.1_FG012 Show transcript tableHide transcript table
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| No. | Exon / Intron | Start | End | Start Phase | End Phase | Length | Sequence |
|---|---|---|---|---|---|---|---|
| 5' upstream sequence |
..........gcttgtcggcgtcggcggtggcggcggcggaggaggaggaggagtcagcg
| ||||||
| 1 | KN538761.1_FG012.exon1 | 256,821 | 256,757 | 0 | 2 | 65 |
ATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAAT GAGCT |
| Intron 1-2 | 256,756 | 256,669 | 88 |
gtgagttcttcctcccttcgccggt..........tgtggttcatctctctcttttgcag
| |||
| 2 | KN538761.1_FG012.exon2 | 256,668 | 256,527 | 2 | 0 | 142 |
GGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAG CGCCGTCGCGCACTTCCTCGTGCAGTGGACCGACTGCAAGCTCGCCGGCGCGCTCGGCCT CCTCAAGATCATGATCTACAAG |
| Intron 2-3 | 256,526 | 256,415 | 112 |
gtctcgcccacacccccgcgccatc..........gttcttgctggtaaatcgaatgcag
| |||
| 3 | KN538761.1_FG012.exon3 | 256,414 | 256,348 | 0 | 1 | 67 |
GTGTACGCCGATGGCACCACGGCTCTGCCGGAGTGGGAGAGGGAGGCCAGCATCAGGCAA TTCTACG |
| Intron 3-4 | 256,347 | 256,250 | 98 |
gtactactactcaatcgcaaccatc..........caaaattttttttgggtcgctgcag
| |||
| 4 | KN538761.1_FG012.exon4 | 256,249 | 256,027 | 1 | 2 | 223 |
GTGTCATCTTCCCGTCGCTGCTCCAGCTGCCGAGTGGGATAACTGAATTGGACGACAGGA AGCAGAGGAGGCTGTGCCTTCAGAAGTTCAGGAAGGTGGAGGAGAGGGTCTCGGAGGTGG ATTTGGAGAGGGAGCTCGAGTGCGGCATCTGCCTCGAGGTGAATGCCAAGATTGTGCTGC CCGATTGCGCGCACTCGCTGTGCATGAGATGCTTCGAGGATTG |
| Intron 4-5 | 256,026 | 255,893 | 134 |
gtaatttgccctcctccttcccctt..........caaatatagctgttgcgtgctctag
| |||
| 5 | KN538761.1_FG012.exon5 | 255,892 | 255,623 | 2 | 2 | 270 |
GAGACAAAATTTCGTTTACCTGAATGTGGTGTTCAAGAAAGAGAGAAAAAGATTACCTTT GCCATATATTGGCTGGTTGTGTTCCTCAGGATGTAAAGTCAGTTGTAAATCTCCTGCACT TCTGATAGAGTACCACAATGCCCTCTCCACAGAGTCTTTAACCATCTTCATGCATCAAGA TGTAGTCCATCCAATCAAACCTGCATCCAGAATGACTTTATTTATAACTGCAGCAAACAT TCTATTGAACTATGTCCTGCTCTTGAGCAG |
| Intron 5-6 | 255,622 | 255,223 | 400 |
gtaataacttattgatgtaaaagaa..........gaaatttggcttgtcacatatgcag
| |||
| 6 | KN538761.1_FG012.exon6 | 255,222 | 255,009 | 2 | 0 | 214 |
GAACACCAAATCAAAGTCGTGCCCCTTCTGCCGCGCCTGCCTCAAGAAGGTGAATCCGAG CAGCCTGTGGTTGTACACCGACGACCGCGATGTTGTGGATATGGATACGTTGACTAGGGA GAACATTAGGCGCCTGTTCATGTTCATAAGTAAGCTTCCACTTGTAGTGCTCCATGTGGT TGACCTTGACATTTACGAGTACCGTATCAAGTGA |
| 3' downstream sequence |
aactgtactcttttgttcataccggtgggtctctgtacatatcaaattca..........
|
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Ensembl Plants release 61 - May 2025 © EMBL-EBI EMBL-EBI
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