Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: KN542027.1_FGT004

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Location

Scaffold KN542027.1: 6,134-10,292 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 16 domains and features and maps to 16 oligo probes.

Gene

This transcript is a product of gene KN542027.1_FG004 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN542027.1_FGT004	2484	827aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Domains & features

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Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Superfamily	65	155	-	SSF57850	-
Gene3D	203	405	-	3.90.70.10	-
Gene3D	640	827	-	3.90.70.10	-
CDD	706	823	-	cd02667	-
Superfamily	213	824	Papain-like cysteine peptidase superfamily	SSF54001	IPR038765 [Display all genes with this domain]
Pfam	216	822	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	PF00443	IPR001394 [Display all genes with this domain]
PANTHER	173	826	Ubiquitin carboxyl-terminal hydrolases	PTHR24006	IPR050164 [Display all genes with this domain]
PROSITE profiles	215	825	Ubiquitin specific protease domain	PS50235	IPR028889 [Display all genes with this domain]
PROSITE patterns	216	231	Ubiquitin specific protease, conserved site	PS00972	IPR018200 [Display all genes with this domain]
PROSITE patterns	760	778	Ubiquitin specific protease, conserved site	PS00973	IPR018200 [Display all genes with this domain]

Other features

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Feature type
Start
End

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Feature type	Start	End
MobiDBLite	1	16
MobiDBLite	1	36
MobiDBLite	172	186
MobiDBLite	172	191
Seg	2	15
Seg	32	43

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