Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

Configure this page

Custom tracks

Share this page

Bookmark this page

Ensembl Plants is produced in collaboration with Gramene

.

Transcript: KN541485.1_FGT002

.

Location

Scaffold KN541485.1: 12,704-20,192 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 20 domains and features and maps to 32 oligo probes.

Gene

This transcript is a product of gene KN541485.1_FG002 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	Flags
-	KN541485.1_FGT002	2421	806aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

.

Domains & features

.

Domains

Original project that identified the domainDomain source	Start	End	Description	Accession	InterPro
Gene3D	12	62	-	1.20.1280.50	-
Superfamily	145	354	-	SSF52047	-
Gene3D	403	484	-	1.20.1280.50	-
Superfamily	547	743	-	SSF52047	-
PROSITE profiles	22	58	F-box domain	PS50181	IPR001810 [Display all genes with this domain]
Pfam	25	63	F-box domain	PF00646	IPR001810 [Display all genes with this domain]
SMART	28	67	F-box domain	SM00256	IPR001810 [Display all genes with this domain]
PROSITE profiles	413	449	F-box domain	PS50181	IPR001810 [Display all genes with this domain]
Pfam	416	454	F-box domain	PF00646	IPR001810 [Display all genes with this domain]
SMART	419	458	F-box domain	SM00256	IPR001810 [Display all genes with this domain]
Superfamily	21	75	F-box-like domain superfamily	SSF81383	IPR036047 [Display all genes with this domain]
Superfamily	406	469	F-box-like domain superfamily	SSF81383	IPR036047 [Display all genes with this domain]
CDD	25	60	F-box/LRR-repeat protein 13-like, F-box domain	cd22160	IPR053781 [Display all genes with this domain]
CDD	416	451	F-box/LRR-repeat protein 13-like, F-box domain	cd22160	IPR053781 [Display all genes with this domain]
PANTHER	408	798	F-box/SCF ubiquitin ligase complex component	PTHR34223	IPR053197 [Display all genes with this domain]
Gene3D	110	370	Leucine-rich repeat domain superfamily	3.80.10.10	IPR032675 [Display all genes with this domain]
Gene3D	514	795	Leucine-rich repeat domain superfamily	3.80.10.10	IPR032675 [Display all genes with this domain]

Other features

Show/hide columns

Feature type
Start
End

Download what you see Download whole table

Filter

Feature type	Start	End
Seg	3	21
Seg	381	396
Seg	470	485

.

Personal Data